Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 AC067863.1-201ENST00000494933 530 ntBASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 AC073592.4-201ENST00000623827 446 ntBASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.39■■□□□ 1.02
SMC1BQ8NDV3 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
SMC1BQ8NDV3 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC21.39■■□□□ 1.02
SMC1BQ8NDV3 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 AC023141.5-201ENST00000458585 616 ntBASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 AC105339.1-204ENST00000636249 355 ntBASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMC1BQ8NDV3 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 AC245100.3-201ENST00000441281 285 ntBASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 AC004877.2-201ENST00000623941 599 ntBASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 AC092667.1-201ENST00000434301 2586 ntBASIC21.38■■□□□ 1.01
SMC1BQ8NDV3 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 Z82202.1-201ENST00000623446 1880 ntBASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 NEK7-201ENST00000367383 586 ntTSL 2 BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 BAD-202ENST00000394531 631 ntTSL 3 BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 NMU-203ENST00000507338 658 ntTSL 3 BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 RN7SL204P-201ENST00000582831 262 ntBASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 AC015911.4-201ENST00000588022 1070 ntBASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 AL589182.2-201ENST00000619332 1049 ntBASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms