Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.66■□□□□ 0.42
HDAC3O15379 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC3O15379 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HDAC3O15379 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC3O15379 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC3O15379 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC3O15379 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC3O15379 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
HDAC3O15379 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.66■□□□□ 0.42
HDAC3O15379 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HDAC3O15379 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
HDAC3O15379 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC3O15379 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDAC3O15379 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
HDAC3O15379 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.65■□□□□ 0.42
HDAC3O15379 LINC00602-201ENST00000629776 2065 ntBASIC17.65■□□□□ 0.42
HDAC3O15379 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HDAC3O15379 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
HDAC3O15379 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HDAC3O15379 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.65■□□□□ 0.42
HDAC3O15379 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.65■□□□□ 0.42
HDAC3O15379 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.65■□□□□ 0.42
HDAC3O15379 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HDAC3O15379 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.65■□□□□ 0.42
HDAC3O15379 C1QBPP2-201ENST00000528754 825 ntBASIC17.65■□□□□ 0.42
HDAC3O15379 SLC25A1P4-201ENST00000567977 778 ntBASIC17.65■□□□□ 0.42
HDAC3O15379 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.65■□□□□ 0.42
HDAC3O15379 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.65■□□□□ 0.42
HDAC3O15379 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.65■□□□□ 0.42
HDAC3O15379 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDAC3O15379 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
HDAC3O15379 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
HDAC3O15379 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC3O15379 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
HDAC3O15379 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
HDAC3O15379 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
HDAC3O15379 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.64■□□□□ 0.41
HDAC3O15379 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.64■□□□□ 0.41
HDAC3O15379 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.64■□□□□ 0.41
HDAC3O15379 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.64■□□□□ 0.41
HDAC3O15379 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.64■□□□□ 0.41
HDAC3O15379 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.64■□□□□ 0.41
HDAC3O15379 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
HDAC3O15379 KRT18P6-201ENST00000555540 1265 ntBASIC17.64■□□□□ 0.41
HDAC3O15379 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.64■□□□□ 0.41
HDAC3O15379 MIR4674-201ENST00000582457 87 ntBASIC17.64■□□□□ 0.41
HDAC3O15379 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC3O15379 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.64■□□□□ 0.41
HDAC3O15379 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.64■□□□□ 0.41
HDAC3O15379 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC3O15379 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.64■□□□□ 0.41
HDAC3O15379 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC3O15379 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.64■□□□□ 0.41
HDAC3O15379 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC3O15379 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.64■□□□□ 0.41
HDAC3O15379 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.64■□□□□ 0.41
HDAC3O15379 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC3O15379 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.64■□□□□ 0.41
HDAC3O15379 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
HDAC3O15379 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC3O15379 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC3O15379 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
HDAC3O15379 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC3O15379 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC3O15379 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
HDAC3O15379 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.63■□□□□ 0.41
HDAC3O15379 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC3O15379 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC3O15379 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC3O15379 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.63■□□□□ 0.41
HDAC3O15379 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.63■□□□□ 0.41
HDAC3O15379 AC084018.2-201ENST00000613093 2607 ntBASIC17.63■□□□□ 0.41
HDAC3O15379 AL138688.1-201ENST00000624851 1594 ntBASIC17.63■□□□□ 0.41
HDAC3O15379 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
HDAC3O15379 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC3O15379 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.63■□□□□ 0.41
HDAC3O15379 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.63■□□□□ 0.41
HDAC3O15379 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
HDAC3O15379 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.63■□□□□ 0.41
HDAC3O15379 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
HDAC3O15379 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC3O15379 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC3O15379 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.63■□□□□ 0.41
HDAC3O15379 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC3O15379 AC022211.2-201ENST00000585075 2527 ntBASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms