Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC30.81■■■□□ 2.52
CUX2O14529 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC30.81■■■□□ 2.52
CUX2O14529 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC30.81■■■□□ 2.52
CUX2O14529 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
CUX2O14529 AC027307.3-201ENST00000594262 1100 ntBASIC30.81■■■□□ 2.52
CUX2O14529 AC008667.4-201ENST00000607370 168 ntBASIC30.81■■■□□ 2.52
CUX2O14529 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC30.81■■■□□ 2.52
CUX2O14529 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
CUX2O14529 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
CUX2O14529 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CUX2O14529 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC30.81■■■□□ 2.52
CUX2O14529 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC30.8■■■□□ 2.52
CUX2O14529 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC30.8■■■□□ 2.52
CUX2O14529 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CUX2O14529 PC-214ENST00000628663 1470 ntTSL 5 BASIC30.8■■■□□ 2.52
CUX2O14529 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC30.8■■■□□ 2.52
CUX2O14529 GOLGA6L11P-201ENST00000417252 1298 ntBASIC30.8■■■□□ 2.52
CUX2O14529 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC30.8■■■□□ 2.52
CUX2O14529 IGHV3-71-201ENST00000523324 359 ntBASIC30.8■■■□□ 2.52
CUX2O14529 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC30.8■■■□□ 2.52
CUX2O14529 COX5A-202ENST00000562233 441 ntTSL 3 BASIC30.8■■■□□ 2.52
CUX2O14529 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC30.8■■■□□ 2.52
CUX2O14529 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC30.8■■■□□ 2.52
CUX2O14529 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CUX2O14529 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
CUX2O14529 AC125437.2-201ENST00000625180 2167 ntBASIC30.79■■■□□ 2.52
CUX2O14529 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC30.79■■■□□ 2.52
CUX2O14529 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
CUX2O14529 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC30.79■■■□□ 2.52
CUX2O14529 NARF-204ENST00000390006 1766 ntTSL 2 BASIC30.79■■■□□ 2.52
CUX2O14529 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC30.79■■■□□ 2.52
CUX2O14529 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC30.79■■■□□ 2.52
CUX2O14529 PRYP5-201ENST00000451909 266 ntBASIC30.79■■■□□ 2.52
CUX2O14529 RN7SL692P-201ENST00000464677 288 ntBASIC30.79■■■□□ 2.52
CUX2O14529 SRP9-204ENST00000619790 377 ntTSL 2 BASIC30.79■■■□□ 2.52
CUX2O14529 AC009154.2-201ENST00000621177 724 ntBASIC30.79■■■□□ 2.52
CUX2O14529 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC30.79■■■□□ 2.52
CUX2O14529 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC30.79■■■□□ 2.52
CUX2O14529 SIGLEC16-201ENST00000599858 1437 ntBASIC30.79■■■□□ 2.52
CUX2O14529 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC30.79■■■□□ 2.52
CUX2O14529 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC30.79■■■□□ 2.52
CUX2O14529 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CUX2O14529 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
CUX2O14529 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC30.79■■■□□ 2.52
CUX2O14529 AL157384.1-201ENST00000445995 2473 ntBASIC30.78■■■□□ 2.52
CUX2O14529 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
CUX2O14529 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
CUX2O14529 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CUX2O14529 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC30.78■■■□□ 2.52
CUX2O14529 VPS29-207ENST00000549970 818 ntTSL 3 BASIC30.78■■■□□ 2.52
CUX2O14529 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CUX2O14529 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC30.78■■■□□ 2.52
CUX2O14529 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC30.78■■■□□ 2.52
CUX2O14529 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CUX2O14529 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC30.78■■■□□ 2.52
CUX2O14529 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CUX2O14529 AL627223.1-201ENST00000416693 442 ntBASIC30.77■■■□□ 2.52
CUX2O14529 HNRNPA1P40-201ENST00000426371 1278 ntBASIC30.77■■■□□ 2.52
CUX2O14529 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
CUX2O14529 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC30.77■■■□□ 2.52
CUX2O14529 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC30.77■■■□□ 2.52
CUX2O14529 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
CUX2O14529 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
CUX2O14529 AC008687.5-201ENST00000593746 558 ntBASIC30.77■■■□□ 2.52
CUX2O14529 AL132655.2-201ENST00000596276 594 ntBASIC30.77■■■□□ 2.52
CUX2O14529 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CUX2O14529 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
CUX2O14529 Z98044.1-201ENST00000632503 1764 ntBASIC30.77■■■□□ 2.52
CUX2O14529 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CUX2O14529 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC30.77■■■□□ 2.52
CUX2O14529 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CUX2O14529 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CUX2O14529 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC30.77■■■□□ 2.52
CUX2O14529 BCAR1-209ENST00000546196 1340 ntBASIC30.77■■■□□ 2.52
CUX2O14529 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
CUX2O14529 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
CUX2O14529 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC30.77■■■□□ 2.52
CUX2O14529 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CUX2O14529 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC30.76■■■□□ 2.52
CUX2O14529 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CUX2O14529 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
CUX2O14529 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC30.76■■■□□ 2.52
CUX2O14529 AC004706.3-202ENST00000621574 984 ntBASIC30.76■■■□□ 2.52
CUX2O14529 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC30.76■■■□□ 2.52
CUX2O14529 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC30.76■■■□□ 2.51
CUX2O14529 LINC01126-201ENST00000623515 1646 ntBASIC30.76■■■□□ 2.51
CUX2O14529 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC30.76■■■□□ 2.51
CUX2O14529 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC30.76■■■□□ 2.51
CUX2O14529 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC30.76■■■□□ 2.51
CUX2O14529 RHOQP3-201ENST00000437982 621 ntBASIC30.76■■■□□ 2.51
CUX2O14529 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC30.76■■■□□ 2.51
CUX2O14529 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC30.76■■■□□ 2.51
CUX2O14529 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC30.76■■■□□ 2.51
CUX2O14529 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
CUX2O14529 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC30.75■■■□□ 2.51
CUX2O14529 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC30.75■■■□□ 2.51
CUX2O14529 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CUX2O14529 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC30.75■■■□□ 2.51
CUX2O14529 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC30.75■■■□□ 2.51
CUX2O14529 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC30.75■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms