Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SOX1O00570 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SOX1O00570 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC19.18■□□□□ 0.66
SOX1O00570 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC19.18■□□□□ 0.66
SOX1O00570 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.18■□□□□ 0.66
SOX1O00570 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.18■□□□□ 0.66
SOX1O00570 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC19.18■□□□□ 0.66
SOX1O00570 SRP9-204ENST00000619790 377 ntTSL 2 BASIC19.18■□□□□ 0.66
SOX1O00570 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SOX1O00570 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.18■□□□□ 0.66
SOX1O00570 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SOX1O00570 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.18■□□□□ 0.66
SOX1O00570 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SOX1O00570 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX1O00570 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX1O00570 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.18■□□□□ 0.66
SOX1O00570 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX1O00570 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.18■□□□□ 0.66
SOX1O00570 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX1O00570 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX1O00570 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
SOX1O00570 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SOX1O00570 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.17■□□□□ 0.66
SOX1O00570 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX1O00570 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX1O00570 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SOX1O00570 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.17■□□□□ 0.66
SOX1O00570 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SOX1O00570 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX1O00570 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX1O00570 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.17■□□□□ 0.66
SOX1O00570 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SOX1O00570 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SOX1O00570 RHOQP3-201ENST00000437982 621 ntBASIC19.17■□□□□ 0.66
SOX1O00570 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC19.17■□□□□ 0.66
SOX1O00570 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX1O00570 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SOX1O00570 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC19.17■□□□□ 0.66
SOX1O00570 REXO1L3P-201ENST00000622202 1288 ntBASIC19.17■□□□□ 0.66
SOX1O00570 SNX12-206ENST00000622259 661 ntTSL 5 BASIC19.17■□□□□ 0.66
SOX1O00570 AL358472.5-202ENST00000641448 1267 ntBASIC19.17■□□□□ 0.66
SOX1O00570 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX1O00570 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX1O00570 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX1O00570 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.17■□□□□ 0.66
SOX1O00570 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX1O00570 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SOX1O00570 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX1O00570 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.16■□□□□ 0.66
SOX1O00570 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.16■□□□□ 0.66
SOX1O00570 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.16■□□□□ 0.66
SOX1O00570 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX1O00570 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC19.16■□□□□ 0.66
SOX1O00570 AL627223.1-201ENST00000416693 442 ntBASIC19.16■□□□□ 0.66
SOX1O00570 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
SOX1O00570 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.16■□□□□ 0.66
SOX1O00570 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.16■□□□□ 0.66
SOX1O00570 AC008687.5-201ENST00000593746 558 ntBASIC19.16■□□□□ 0.66
SOX1O00570 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SOX1O00570 AC010654.1-201ENST00000615722 808 ntBASIC19.16■□□□□ 0.66
SOX1O00570 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX1O00570 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.16■□□□□ 0.66
SOX1O00570 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.16■□□□□ 0.66
SOX1O00570 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX1O00570 AC099343.3-201ENST00000605834 2503 ntBASIC19.16■□□□□ 0.66
SOX1O00570 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SOX1O00570 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX1O00570 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX1O00570 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SOX1O00570 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.15■□□□□ 0.66
SOX1O00570 AC020907.5-201ENST00000624372 1936 ntBASIC19.15■□□□□ 0.66
SOX1O00570 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SOX1O00570 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SOX1O00570 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX1O00570 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
SOX1O00570 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX1O00570 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX1O00570 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SOX1O00570 SPDYE21P-201ENST00000413323 827 ntBASIC19.15■□□□□ 0.66
SOX1O00570 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC19.15■□□□□ 0.66
SOX1O00570 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC19.15■□□□□ 0.66
SOX1O00570 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC19.15■□□□□ 0.66
SOX1O00570 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.15■□□□□ 0.66
SOX1O00570 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC19.15■□□□□ 0.66
SOX1O00570 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC19.15■□□□□ 0.66
SOX1O00570 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SOX1O00570 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX1O00570 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.15■□□□□ 0.66
SOX1O00570 SIGLEC16-201ENST00000599858 1437 ntBASIC19.15■□□□□ 0.66
SOX1O00570 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
SOX1O00570 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.14■□□□□ 0.66
SOX1O00570 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SOX1O00570 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
SOX1O00570 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SOX1O00570 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SOX1O00570 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SOX1O00570 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.14■□□□□ 0.65
SOX1O00570 CNN2P2-201ENST00000443536 909 ntBASIC19.14■□□□□ 0.65
SOX1O00570 CNN2P3-201ENST00000450201 906 ntBASIC19.14■□□□□ 0.65
SOX1O00570 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms