Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS28Q9UK41 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS28Q9UK41 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS28Q9UK41 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS28Q9UK41 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS28Q9UK41 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.67■□□□□ 0.58
VPS28Q9UK41 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS28Q9UK41 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS28Q9UK41 AL024508.2-201ENST00000607749 1894 ntBASIC18.67■□□□□ 0.58
VPS28Q9UK41 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS28Q9UK41 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS28Q9UK41 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS28Q9UK41 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS28Q9UK41 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS28Q9UK41 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS28Q9UK41 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS28Q9UK41 TSSC2-201ENST00000450217 709 ntBASIC18.66■□□□□ 0.58
VPS28Q9UK41 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 AL390719.2-201ENST00000606993 987 ntBASIC18.66■□□□□ 0.58
VPS28Q9UK41 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS28Q9UK41 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS28Q9UK41 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 AL354751.1-201ENST00000412768 1863 ntBASIC18.66■□□□□ 0.58
VPS28Q9UK41 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS28Q9UK41 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 NOC2LP2-201ENST00000407594 1944 ntBASIC18.66■□□□□ 0.58
VPS28Q9UK41 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 WIZP1-201ENST00000531444 2299 ntBASIC18.66■□□□□ 0.58
VPS28Q9UK41 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS28Q9UK41 AC016734.2-201ENST00000624325 1377 ntBASIC18.66■□□□□ 0.58
VPS28Q9UK41 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS28Q9UK41 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS28Q9UK41 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
VPS28Q9UK41 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
VPS28Q9UK41 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
VPS28Q9UK41 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.65■□□□□ 0.58
VPS28Q9UK41 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.65■□□□□ 0.58
VPS28Q9UK41 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
VPS28Q9UK41 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
VPS28Q9UK41 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS28Q9UK41 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
VPS28Q9UK41 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS28Q9UK41 AC073592.3-201ENST00000625118 1834 ntBASIC18.65■□□□□ 0.58
VPS28Q9UK41 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS28Q9UK41 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS28Q9UK41 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
VPS28Q9UK41 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS28Q9UK41 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.64■□□□□ 0.58
VPS28Q9UK41 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS28Q9UK41 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.64■□□□□ 0.58
VPS28Q9UK41 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS28Q9UK41 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS28Q9UK41 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS28Q9UK41 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS28Q9UK41 NOC2LP1-202ENST00000452600 2235 ntBASIC18.64■□□□□ 0.57
VPS28Q9UK41 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS28Q9UK41 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS28Q9UK41 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS28Q9UK41 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.64■□□□□ 0.57
VPS28Q9UK41 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS28Q9UK41 HCG4P8-203ENST00000443049 980 ntBASIC18.64■□□□□ 0.57
VPS28Q9UK41 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS28Q9UK41 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
VPS28Q9UK41 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS28Q9UK41 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS28Q9UK41 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
VPS28Q9UK41 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS28Q9UK41 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS28Q9UK41 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS28Q9UK41 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS28Q9UK41 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms