Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC004263.2-201ENST00000617183 678 ntBASIC18.15■□□□□ 0.5
TM9SF3Q9HD45 REXO1L6P-202ENST00000619970 1078 ntBASIC18.15■□□□□ 0.5
TM9SF3Q9HD45 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TM9SF3Q9HD45 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
TM9SF3Q9HD45 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TM9SF3Q9HD45 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TM9SF3Q9HD45 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TM9SF3Q9HD45 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TM9SF3Q9HD45 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.15■□□□□ 0.5
TM9SF3Q9HD45 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TM9SF3Q9HD45 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TM9SF3Q9HD45 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TM9SF3Q9HD45 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TM9SF3Q9HD45 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
TM9SF3Q9HD45 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
TM9SF3Q9HD45 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
TM9SF3Q9HD45 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.5
TM9SF3Q9HD45 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TM9SF3Q9HD45 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.5
TM9SF3Q9HD45 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
TM9SF3Q9HD45 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 MTMR9LP-203ENST00000426597 1545 ntBASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 AL163051.1-201ENST00000569214 1512 ntBASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 AP000593.1-201ENST00000393668 712 ntBASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 KRT18P41-201ENST00000518924 1277 ntBASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TM9SF3Q9HD45 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TM9SF3Q9HD45 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 AF238378.1-201ENST00000526806 358 ntBASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 HLA-A-201ENST00000376802 1334 ntBASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.12■□□□□ 0.49
TM9SF3Q9HD45 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms