Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 KSR1P1-201ENST00000446298 240 ntBASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 AC091390.4-202ENST00000476426 537 ntBASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 RPS2P4-201ENST00000476944 856 ntBASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 ID1-201ENST00000376105 1233 ntBASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 AL353807.1-201ENST00000427475 662 ntBASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 AC133681.1-201ENST00000465482 601 ntBASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 KRT18P6-201ENST00000555540 1265 ntBASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 RN7SL471P-201ENST00000580476 299 ntBASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 AC006058.3-201ENST00000606217 1069 ntBASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 AC011298.2-201ENST00000617989 482 ntBASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 CR392000.1-201ENST00000624770 1228 ntBASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 KRT16P1-201ENST00000399124 1418 ntBASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 AC008894.3-201ENST00000624324 3103 ntBASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.65■□□□□ 0.1
CHMP1AQ9HD42 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.1
CHMP1AQ9HD42 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 AL031985.4-201ENST00000642138 673 ntBASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CHMP1AQ9HD42 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms