Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 HOXB1-202ENST00000577092 1414 ntBASIC20.22■□□□□ 0.83
RNF39Q9H2S5 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 AC104390.1-201ENST00000555663 520 ntBASIC20.22■□□□□ 0.83
RNF39Q9H2S5 AC022405.1-201ENST00000559841 516 ntTSL 3 BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 AC009269.6-201ENST00000621778 588 ntBASIC20.22■□□□□ 0.83
RNF39Q9H2S5 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNF39Q9H2S5 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 AL645929.1-201ENST00000420084 975 ntBASIC20.21■□□□□ 0.83
RNF39Q9H2S5 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 RNU6-775P-201ENST00000459318 96 ntBASIC20.21■□□□□ 0.83
RNF39Q9H2S5 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 AP001636.2-201ENST00000525517 696 ntBASIC20.21■□□□□ 0.83
RNF39Q9H2S5 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 AC068733.1-201ENST00000532430 1288 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 AL357093.1-201ENST00000556926 458 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 AL139022.2-201ENST00000606934 443 ntBASIC20.21■□□□□ 0.83
RNF39Q9H2S5 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 OR52B5P-203ENST00000641694 1313 ntBASIC20.21■□□□□ 0.83
RNF39Q9H2S5 AL391807.1-203ENST00000604392 2365 ntBASIC20.21■□□□□ 0.83
RNF39Q9H2S5 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RNF39Q9H2S5 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 LIPC-204ENST00000433326 1484 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 IL36G-201ENST00000259205 1195 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 AL512637.1-201ENST00000439523 1231 ntBASIC20.2■□□□□ 0.82
RNF39Q9H2S5 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 AC124947.1-201ENST00000552835 814 ntTSL 3 BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 AC010240.3-201ENST00000607688 395 ntBASIC20.2■□□□□ 0.82
RNF39Q9H2S5 AC069148.1-201ENST00000608741 768 ntBASIC20.2■□□□□ 0.82
RNF39Q9H2S5 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 MAPK10-350ENST00000641777 965 ntBASIC20.2■□□□□ 0.82
RNF39Q9H2S5 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF39Q9H2S5 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.19■□□□□ 0.82
RNF39Q9H2S5 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF39Q9H2S5 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF39Q9H2S5 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF39Q9H2S5 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF39Q9H2S5 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNF39Q9H2S5 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.19■□□□□ 0.82
RNF39Q9H2S5 AC092447.3-201ENST00000426027 686 ntBASIC20.19■□□□□ 0.82
RNF39Q9H2S5 AC073143.1-201ENST00000436316 395 ntBASIC20.19■□□□□ 0.82
RNF39Q9H2S5 ATP6AP2-204ENST00000447485 1254 ntTSL 5 BASIC20.19■□□□□ 0.82
RNF39Q9H2S5 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNF39Q9H2S5 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.19■□□□□ 0.82
RNF39Q9H2S5 MTCO3P28-201ENST00000513351 515 ntBASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms