Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
NUDCD3Q8IVD9 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.07■□□□□ 0.48
NUDCD3Q8IVD9 KRT18P55-202ENST00000578578 1546 ntBASIC18.07■□□□□ 0.48
NUDCD3Q8IVD9 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NUDCD3Q8IVD9 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.07■□□□□ 0.48
NUDCD3Q8IVD9 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.07■□□□□ 0.48
NUDCD3Q8IVD9 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 SDHAP2-201ENST00000455183 2001 ntBASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUDCD3Q8IVD9 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUDCD3Q8IVD9 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 FER1L4-210ENST00000615531 5998 ntBASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 GPAT2P1-201ENST00000444924 1672 ntBASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 AC011506.1-201ENST00000474329 610 ntBASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUDCD3Q8IVD9 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms