Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
PRKDCP78527 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC13.03□□□□□ -0.32
PRKDCP78527 AL627223.1-201ENST00000416693 442 ntBASIC13.03□□□□□ -0.32
PRKDCP78527 BASP1P1-201ENST00000430708 665 ntBASIC13.03□□□□□ -0.32
PRKDCP78527 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
PRKDCP78527 AC096734.2-201ENST00000562054 433 ntBASIC13.03□□□□□ -0.32
PRKDCP78527 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC13.03□□□□□ -0.32
PRKDCP78527 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC13.03□□□□□ -0.32
PRKDCP78527 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
PRKDCP78527 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC13.02□□□□□ -0.32
PRKDCP78527 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
PRKDCP78527 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
PRKDCP78527 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC13.02□□□□□ -0.32
PRKDCP78527 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
PRKDCP78527 AC112907.3-201ENST00000577781 2400 ntBASIC13.02□□□□□ -0.32
PRKDCP78527 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
PRKDCP78527 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC13.02□□□□□ -0.32
PRKDCP78527 SPDYE21P-201ENST00000413323 827 ntBASIC13.02□□□□□ -0.32
PRKDCP78527 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC13.02□□□□□ -0.32
PRKDCP78527 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.32
PRKDCP78527 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC13.02□□□□□ -0.32
PRKDCP78527 AC099522.2-201ENST00000607001 744 ntBASIC13.02□□□□□ -0.32
PRKDCP78527 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
PRKDCP78527 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
PRKDCP78527 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 CYP51A1P2-201ENST00000419457 1499 ntBASIC13.02□□□□□ -0.33
PRKDCP78527 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
PRKDCP78527 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC13.02□□□□□ -0.33
PRKDCP78527 AC003669.1-201ENST00000334569 611 ntBASIC13.02□□□□□ -0.33
PRKDCP78527 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC13.02□□□□□ -0.33
PRKDCP78527 PGM5P2-202ENST00000637225 1043 ntBASIC13.02□□□□□ -0.33
PRKDCP78527 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 AC025580.3-201ENST00000617932 1424 ntBASIC13.02□□□□□ -0.33
PRKDCP78527 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC13.02□□□□□ -0.33
PRKDCP78527 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC13.02□□□□□ -0.33
PRKDCP78527 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC13.02□□□□□ -0.33
PRKDCP78527 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC13.02□□□□□ -0.33
PRKDCP78527 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC13.02□□□□□ -0.33
PRKDCP78527 AL512356.2-201ENST00000546955 174 ntBASIC13.02□□□□□ -0.33
PRKDCP78527 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PRKDCP78527 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC13.02□□□□□ -0.33
PRKDCP78527 AL024508.2-201ENST00000607749 1894 ntBASIC13.01□□□□□ -0.33
PRKDCP78527 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
PRKDCP78527 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC13.01□□□□□ -0.33
PRKDCP78527 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC13.01□□□□□ -0.33
PRKDCP78527 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
PRKDCP78527 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC13.01□□□□□ -0.33
PRKDCP78527 CALY-202ENST00000368555 783 ntTSL 2 BASIC13.01□□□□□ -0.33
PRKDCP78527 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
PRKDCP78527 FAM58CP-201ENST00000435741 640 ntBASIC13.01□□□□□ -0.33
PRKDCP78527 RPS2P32-201ENST00000439199 892 ntBASIC13.01□□□□□ -0.33
PRKDCP78527 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC13.01□□□□□ -0.33
PRKDCP78527 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC13.01□□□□□ -0.33
PRKDCP78527 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
PRKDCP78527 IGHV3-72-202ENST00000621503 303 ntBASIC13.01□□□□□ -0.33
PRKDCP78527 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC13.01□□□□□ -0.33
PRKDCP78527 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
PRKDCP78527 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
PRKDCP78527 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC13.01□□□□□ -0.33
PRKDCP78527 PARP8-218ENST00000513738 596 ntTSL 4 BASIC13.01□□□□□ -0.33
PRKDCP78527 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC13.01□□□□□ -0.33
PRKDCP78527 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 NFYC-AS1-201ENST00000606277 1687 ntBASIC13.01□□□□□ -0.33
PRKDCP78527 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
PRKDCP78527 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC13.01□□□□□ -0.33
PRKDCP78527 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC13.01□□□□□ -0.33
PRKDCP78527 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC13.01□□□□□ -0.33
PRKDCP78527 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC13.01□□□□□ -0.33
PRKDCP78527 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PRKDCP78527 COX11-202ENST00000571584 1108 ntTSL 2 BASIC13.01□□□□□ -0.33
PRKDCP78527 MIR4525-201ENST00000580000 75 ntBASIC13.01□□□□□ -0.33
PRKDCP78527 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms