Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC27.39■■□□□ 1.97
COL17A1Q9UMD9 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
COL17A1Q9UMD9 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
COL17A1Q9UMD9 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
COL17A1Q9UMD9 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
COL17A1Q9UMD9 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 FAM58CP-201ENST00000435741 640 ntBASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 AC010507.1-201ENST00000633895 436 ntBASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 FEM1AP3-201ENST00000403722 1741 ntBASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 AC002472.2-201ENST00000442739 958 ntBASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 PRYP5-201ENST00000451909 266 ntBASIC27.38■■□□□ 1.97
COL17A1Q9UMD9 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 SIGLEC16-201ENST00000599858 1437 ntBASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC27.37■■□□□ 1.97
COL17A1Q9UMD9 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 PMS2P4-201ENST00000412466 1052 ntBASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 AC004835.2-201ENST00000603762 682 ntBASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 AC004706.3-202ENST00000621574 984 ntBASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 AC105339.1-204ENST00000636249 355 ntBASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 AC112907.3-201ENST00000577781 2400 ntBASIC27.36■■□□□ 1.97
COL17A1Q9UMD9 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 IGHV3-65-201ENST00000523210 341 ntBASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 RN7SL204P-201ENST00000582831 262 ntBASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 AC015911.4-201ENST00000588022 1070 ntBASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 AC092902.6-201ENST00000641783 218 ntBASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
COL17A1Q9UMD9 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms