Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 IRX1P1-201ENST00000438849 1838 ntBASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 AL357033.4-201ENST00000617703 1807 ntBASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 RPS8P6-201ENST00000426177 609 ntBASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 IGHV3-22-201ENST00000520721 359 ntBASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 AC010327.4-202ENST00000591484 748 ntBASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 AC140113.2-201ENST00000604370 208 ntBASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 LINC02084-201ENST00000606069 1096 ntBASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 AP001269.4-201ENST00000609611 512 ntBASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 Z98044.1-201ENST00000632503 1764 ntBASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 KRT8P50-201ENST00000562022 1438 ntBASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMD1Q9UGP4 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 MED15P5-201ENST00000423150 992 ntBASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 AC098831.1-202ENST00000438821 336 ntBASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 AC068587.9-201ENST00000641814 219 ntBASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 AC005332.7-201ENST00000614046 2005 ntBASIC18.9■□□□□ 0.62
LIMD1Q9UGP4 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.89■□□□□ 0.62
LIMD1Q9UGP4 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 PMS2P2-201ENST00000425039 1128 ntBASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 AC021087.4-201ENST00000563761 564 ntBASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms