Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSU72Q9NP77 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSU72Q9NP77 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSU72Q9NP77 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.05■□□□□ 0.48
SSU72Q9NP77 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 CR392000.1-201ENST00000624770 1228 ntBASIC18.05■□□□□ 0.48
SSU72Q9NP77 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SSU72Q9NP77 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSU72Q9NP77 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 AL118508.1-201ENST00000613502 2345 ntBASIC18.05■□□□□ 0.48
SSU72Q9NP77 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSU72Q9NP77 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SSU72Q9NP77 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
SSU72Q9NP77 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SSU72Q9NP77 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.04■□□□□ 0.48
SSU72Q9NP77 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.04■□□□□ 0.48
SSU72Q9NP77 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SSU72Q9NP77 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.04■□□□□ 0.48
SSU72Q9NP77 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SSU72Q9NP77 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SSU72Q9NP77 TNRC18P3-201ENST00000441896 2691 ntBASIC18.04■□□□□ 0.48
SSU72Q9NP77 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.04■□□□□ 0.48
SSU72Q9NP77 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.04■□□□□ 0.48
SSU72Q9NP77 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.04■□□□□ 0.48
SSU72Q9NP77 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.04■□□□□ 0.48
SSU72Q9NP77 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.04■□□□□ 0.48
SSU72Q9NP77 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
SSU72Q9NP77 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.04■□□□□ 0.48
SSU72Q9NP77 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SSU72Q9NP77 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
SSU72Q9NP77 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SSU72Q9NP77 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSU72Q9NP77 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSU72Q9NP77 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSU72Q9NP77 LINC00304-203ENST00000565008 1864 ntBASIC18.03■□□□□ 0.48
SSU72Q9NP77 AL024508.2-201ENST00000607749 1894 ntBASIC18.03■□□□□ 0.48
SSU72Q9NP77 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSU72Q9NP77 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSU72Q9NP77 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SSU72Q9NP77 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSU72Q9NP77 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.03■□□□□ 0.48
SSU72Q9NP77 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SSU72Q9NP77 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SSU72Q9NP77 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SSU72Q9NP77 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SSU72Q9NP77 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.03■□□□□ 0.48
SSU72Q9NP77 CA15P1-201ENST00000481698 905 ntBASIC18.03■□□□□ 0.48
SSU72Q9NP77 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SSU72Q9NP77 AC009065.1-201ENST00000564055 1225 ntBASIC18.03■□□□□ 0.48
SSU72Q9NP77 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.03■□□□□ 0.48
SSU72Q9NP77 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SSU72Q9NP77 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSU72Q9NP77 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
SSU72Q9NP77 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSU72Q9NP77 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSU72Q9NP77 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.03■□□□□ 0.48
SSU72Q9NP77 AC099343.3-201ENST00000605834 2503 ntBASIC18.03■□□□□ 0.48
SSU72Q9NP77 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSU72Q9NP77 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SSU72Q9NP77 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.03■□□□□ 0.48
SSU72Q9NP77 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SSU72Q9NP77 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSU72Q9NP77 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SSU72Q9NP77 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.48
SSU72Q9NP77 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.02■□□□□ 0.48
SSU72Q9NP77 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SSU72Q9NP77 FSCN1P1-201ENST00000568912 1481 ntBASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms