Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHROOM1Q2M3G4 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
SHROOM1Q2M3G4 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHROOM1Q2M3G4 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
SHROOM1Q2M3G4 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC21.16■□□□□ 0.98
SHROOM1Q2M3G4 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SHROOM1Q2M3G4 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
SHROOM1Q2M3G4 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.16■□□□□ 0.98
SHROOM1Q2M3G4 GZMM-202ENST00000592501 941 ntTSL 3 BASIC21.16■□□□□ 0.98
SHROOM1Q2M3G4 AC011467.2-201ENST00000598425 242 ntBASIC21.16■□□□□ 0.98
SHROOM1Q2M3G4 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.16■□□□□ 0.98
SHROOM1Q2M3G4 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHROOM1Q2M3G4 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHROOM1Q2M3G4 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 FUOM-202ENST00000368551 628 ntTSL 3 BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 KRT18P65-201ENST00000439811 1286 ntBASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 RNPS1P1-201ENST00000507437 918 ntBASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 AC112698.1-201ENST00000510299 916 ntBASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 AC008687.5-201ENST00000593746 558 ntBASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SHROOM1Q2M3G4 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.98
SHROOM1Q2M3G4 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SHROOM1Q2M3G4 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC21.14■□□□□ 0.98
SHROOM1Q2M3G4 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC21.14■□□□□ 0.98
SHROOM1Q2M3G4 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC21.14■□□□□ 0.98
SHROOM1Q2M3G4 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC21.14■□□□□ 0.98
SHROOM1Q2M3G4 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SHROOM1Q2M3G4 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SHROOM1Q2M3G4 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.98
SHROOM1Q2M3G4 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.98
SHROOM1Q2M3G4 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC21.14■□□□□ 0.98
SHROOM1Q2M3G4 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.14■□□□□ 0.98
SHROOM1Q2M3G4 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SHROOM1Q2M3G4 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 SART3-203ENST00000546611 1184 ntBASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 AP000974.1-201ENST00000623909 2387 ntBASIC21.14■□□□□ 0.97
SHROOM1Q2M3G4 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 MIR574-201ENST00000385209 96 ntBASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 FAM215A-202ENST00000632077 792 ntBASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
SHROOM1Q2M3G4 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms