Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.26■□□□□ 0.35
RORAP35398 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.26■□□□□ 0.35
RORAP35398 AC104819.1-201ENST00000504587 486 ntBASIC17.26■□□□□ 0.35
RORAP35398 AC113404.2-201ENST00000507884 177 ntBASIC17.26■□□□□ 0.35
RORAP35398 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.26■□□□□ 0.35
RORAP35398 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.26■□□□□ 0.35
RORAP35398 Z69720.1-201ENST00000601483 472 ntBASIC17.26■□□□□ 0.35
RORAP35398 AL732292.2-201ENST00000609649 430 ntBASIC17.26■□□□□ 0.35
RORAP35398 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.26■□□□□ 0.35
RORAP35398 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
RORAP35398 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
RORAP35398 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.26■□□□□ 0.35
RORAP35398 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
RORAP35398 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RORAP35398 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RORAP35398 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RORAP35398 AC093503.3-201ENST00000624917 2352 ntBASIC17.25■□□□□ 0.35
RORAP35398 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RORAP35398 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RORAP35398 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RORAP35398 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RORAP35398 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RORAP35398 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RORAP35398 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RORAP35398 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RORAP35398 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.25■□□□□ 0.35
RORAP35398 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RORAP35398 IGHV3-47-201ENST00000425060 335 ntBASIC17.25■□□□□ 0.35
RORAP35398 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RORAP35398 KRT17P6-201ENST00000453795 1220 ntBASIC17.25■□□□□ 0.35
RORAP35398 FOSL1P1-201ENST00000511041 816 ntBASIC17.25■□□□□ 0.35
RORAP35398 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.25■□□□□ 0.35
RORAP35398 AC074051.2-201ENST00000565115 352 ntBASIC17.25■□□□□ 0.35
RORAP35398 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.25■□□□□ 0.35
RORAP35398 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.25■□□□□ 0.35
RORAP35398 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.25■□□□□ 0.35
RORAP35398 AC008687.5-201ENST00000593746 558 ntBASIC17.25■□□□□ 0.35
RORAP35398 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.25■□□□□ 0.35
RORAP35398 IFNL4P1-201ENST00000607083 540 ntBASIC17.25■□□□□ 0.35
RORAP35398 AL121772.3-201ENST00000610840 674 ntBASIC17.25■□□□□ 0.35
RORAP35398 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RORAP35398 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.25■□□□□ 0.35
RORAP35398 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
RORAP35398 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RORAP35398 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RORAP35398 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RORAP35398 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.25■□□□□ 0.35
RORAP35398 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.25■□□□□ 0.35
RORAP35398 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.24■□□□□ 0.35
RORAP35398 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.24■□□□□ 0.35
RORAP35398 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RORAP35398 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RORAP35398 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
RORAP35398 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
RORAP35398 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.24■□□□□ 0.35
RORAP35398 LINC00167-201ENST00000530583 1419 ntBASIC17.24■□□□□ 0.35
RORAP35398 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
RORAP35398 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 AL499627.1-201ENST00000569373 2188 ntBASIC17.24■□□□□ 0.35
RORAP35398 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.24■□□□□ 0.35
RORAP35398 AC004870.1-201ENST00000315132 882 ntBASIC17.24■□□□□ 0.35
RORAP35398 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.24■□□□□ 0.35
RORAP35398 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.24■□□□□ 0.35
RORAP35398 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 AL845331.1-201ENST00000424978 1190 ntBASIC17.24■□□□□ 0.35
RORAP35398 AC246785.2-201ENST00000432512 513 ntBASIC17.24■□□□□ 0.35
RORAP35398 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.24■□□□□ 0.35
RORAP35398 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.24■□□□□ 0.35
RORAP35398 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.24■□□□□ 0.35
RORAP35398 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 AP005901.3-202ENST00000581653 237 ntBASIC17.24■□□□□ 0.35
RORAP35398 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
RORAP35398 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.24■□□□□ 0.35
RORAP35398 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
RORAP35398 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.24■□□□□ 0.35
RORAP35398 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RORAP35398 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms