Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AL022342.1-201ENST00000400363 863 ntBASIC17.72■□□□□ 0.43
LMX1AQ8TE12 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 AC009154.2-201ENST00000621177 724 ntBASIC17.72■□□□□ 0.43
LMX1AQ8TE12 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.72■□□□□ 0.43
LMX1AQ8TE12 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 MTCL1P1-201ENST00000446207 792 ntBASIC17.71■□□□□ 0.43
LMX1AQ8TE12 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 AC132008.2-207ENST00000454517 770 ntBASIC17.71■□□□□ 0.43
LMX1AQ8TE12 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 AC005336.2-201ENST00000593183 939 ntBASIC17.71■□□□□ 0.43
LMX1AQ8TE12 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1AQ8TE12 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
LMX1AQ8TE12 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 TP73-AS1-210ENST00000637775 1455 ntBASIC17.7■□□□□ 0.42
LMX1AQ8TE12 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 ANO7L1-203ENST00000602586 1720 ntBASIC17.7■□□□□ 0.42
LMX1AQ8TE12 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 RCN1P2-201ENST00000398357 915 ntBASIC17.7■□□□□ 0.42
LMX1AQ8TE12 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 AC064862.7-201ENST00000604520 867 ntBASIC17.7■□□□□ 0.42
LMX1AQ8TE12 TP73-AS1-207ENST00000624167 988 ntBASIC17.7■□□□□ 0.42
LMX1AQ8TE12 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 HLA-A-201ENST00000376802 1334 ntBASIC17.7■□□□□ 0.42
LMX1AQ8TE12 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.7■□□□□ 0.42
LMX1AQ8TE12 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 FAM197Y8-203ENST00000450145 560 ntBASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms