Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 BAD-202ENST00000394531 631 ntTSL 3 BASIC12.98□□□□□ -0.33
COL7A1Q02388 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC12.98□□□□□ -0.33
COL7A1Q02388 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC12.98□□□□□ -0.33
COL7A1Q02388 AC064836.3-201ENST00000607928 673 ntBASIC12.98□□□□□ -0.33
COL7A1Q02388 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL7A1Q02388 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
COL7A1Q02388 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
COL7A1Q02388 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL7A1Q02388 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC12.98□□□□□ -0.33
COL7A1Q02388 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL7A1Q02388 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL7A1Q02388 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC12.98□□□□□ -0.33
COL7A1Q02388 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC12.98□□□□□ -0.33
COL7A1Q02388 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC12.98□□□□□ -0.33
COL7A1Q02388 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC12.98□□□□□ -0.33
COL7A1Q02388 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC12.98□□□□□ -0.33
COL7A1Q02388 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC12.98□□□□□ -0.33
COL7A1Q02388 AC079776.2-201ENST00000641154 1609 ntBASIC12.98□□□□□ -0.33
COL7A1Q02388 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL7A1Q02388 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL7A1Q02388 GPR89P-201ENST00000407924 1495 ntBASIC12.97□□□□□ -0.33
COL7A1Q02388 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL7A1Q02388 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
COL7A1Q02388 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL7A1Q02388 NMU-203ENST00000507338 658 ntTSL 3 BASIC12.97□□□□□ -0.33
COL7A1Q02388 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL7A1Q02388 RNF34-208ENST00000555076 593 ntTSL 3 BASIC12.97□□□□□ -0.33
COL7A1Q02388 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC12.97□□□□□ -0.33
COL7A1Q02388 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC12.97□□□□□ -0.33
COL7A1Q02388 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC12.97□□□□□ -0.33
COL7A1Q02388 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL7A1Q02388 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL7A1Q02388 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL7A1Q02388 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL7A1Q02388 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC12.97□□□□□ -0.33
COL7A1Q02388 AC108073.2-201ENST00000464002 357 ntBASIC12.97□□□□□ -0.33
COL7A1Q02388 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
COL7A1Q02388 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC12.97□□□□□ -0.33
COL7A1Q02388 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC12.97□□□□□ -0.33
COL7A1Q02388 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL7A1Q02388 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC12.97□□□□□ -0.33
COL7A1Q02388 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL7A1Q02388 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL7A1Q02388 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL7A1Q02388 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC12.97□□□□□ -0.33
COL7A1Q02388 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL7A1Q02388 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL7A1Q02388 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL7A1Q02388 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL7A1Q02388 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL7A1Q02388 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL7A1Q02388 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL7A1Q02388 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC12.96□□□□□ -0.33
COL7A1Q02388 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL7A1Q02388 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC12.96□□□□□ -0.33
COL7A1Q02388 AC005225.4-201ENST00000557330 545 ntBASIC12.96□□□□□ -0.33
COL7A1Q02388 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC12.96□□□□□ -0.33
COL7A1Q02388 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL7A1Q02388 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL7A1Q02388 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC12.96□□□□□ -0.33
COL7A1Q02388 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC12.96□□□□□ -0.33
COL7A1Q02388 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC12.96□□□□□ -0.33
COL7A1Q02388 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL7A1Q02388 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC12.96□□□□□ -0.33
COL7A1Q02388 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC12.96□□□□□ -0.33
COL7A1Q02388 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL7A1Q02388 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL7A1Q02388 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL7A1Q02388 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL7A1Q02388 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC12.96□□□□□ -0.33
COL7A1Q02388 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC12.96□□□□□ -0.33
COL7A1Q02388 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC12.96□□□□□ -0.33
COL7A1Q02388 PUS1-205ENST00000535067 838 ntTSL 3 BASIC12.96□□□□□ -0.33
COL7A1Q02388 AC087641.1-201ENST00000557561 1021 ntBASIC12.96□□□□□ -0.33
COL7A1Q02388 AC018845.2-201ENST00000568326 409 ntBASIC12.96□□□□□ -0.33
COL7A1Q02388 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL7A1Q02388 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL7A1Q02388 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC12.96□□□□□ -0.34
COL7A1Q02388 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL7A1Q02388 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC12.96□□□□□ -0.34
COL7A1Q02388 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC12.96□□□□□ -0.34
COL7A1Q02388 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC12.96□□□□□ -0.34
COL7A1Q02388 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC12.96□□□□□ -0.34
COL7A1Q02388 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL7A1Q02388 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL7A1Q02388 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC12.95□□□□□ -0.34
COL7A1Q02388 CITED2-204ENST00000618718 901 ntTSL 2 BASIC12.95□□□□□ -0.34
COL7A1Q02388 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
COL7A1Q02388 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC12.95□□□□□ -0.34
COL7A1Q02388 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL7A1Q02388 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL7A1Q02388 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC12.95□□□□□ -0.34
COL7A1Q02388 ME2-218ENST00000640965 2476 ntTSL 5 BASIC12.95□□□□□ -0.34
COL7A1Q02388 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC12.95□□□□□ -0.34
COL7A1Q02388 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL7A1Q02388 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL7A1Q02388 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC12.95□□□□□ -0.34
COL7A1Q02388 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL7A1Q02388 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
COL7A1Q02388 CEND1P1-201ENST00000451006 455 ntBASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms