Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.61■□□□□ 0.57
CBX4O00257 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.61■□□□□ 0.57
CBX4O00257 AC008687.5-201ENST00000593746 558 ntBASIC18.61■□□□□ 0.57
CBX4O00257 GPR32P1-201ENST00000601788 811 ntBASIC18.61■□□□□ 0.57
CBX4O00257 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.61■□□□□ 0.57
CBX4O00257 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX4O00257 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
CBX4O00257 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CBX4O00257 AC104581.1-202ENST00000635932 2618 ntBASIC18.61■□□□□ 0.57
CBX4O00257 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX4O00257 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CBX4O00257 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CBX4O00257 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CBX4O00257 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CBX4O00257 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX4O00257 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CBX4O00257 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX4O00257 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX4O00257 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.6■□□□□ 0.57
CBX4O00257 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CBX4O00257 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.6■□□□□ 0.57
CBX4O00257 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CBX4O00257 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX4O00257 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CBX4O00257 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.6■□□□□ 0.57
CBX4O00257 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX4O00257 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.6■□□□□ 0.57
CBX4O00257 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.6■□□□□ 0.57
CBX4O00257 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX4O00257 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.6■□□□□ 0.57
CBX4O00257 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX4O00257 AL121672.3-201ENST00000608644 468 ntBASIC18.6■□□□□ 0.57
CBX4O00257 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX4O00257 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX4O00257 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.6■□□□□ 0.57
CBX4O00257 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CBX4O00257 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CBX4O00257 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CBX4O00257 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.6■□□□□ 0.57
CBX4O00257 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CBX4O00257 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CBX4O00257 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CBX4O00257 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX4O00257 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX4O00257 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX4O00257 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.59■□□□□ 0.57
CBX4O00257 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX4O00257 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX4O00257 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CBX4O00257 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.59■□□□□ 0.57
CBX4O00257 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CBX4O00257 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX4O00257 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX4O00257 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX4O00257 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX4O00257 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CBX4O00257 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CBX4O00257 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.59■□□□□ 0.57
CBX4O00257 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.59■□□□□ 0.57
CBX4O00257 KRT8P26-201ENST00000534154 1276 ntBASIC18.59■□□□□ 0.57
CBX4O00257 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.59■□□□□ 0.57
CBX4O00257 AL390719.2-201ENST00000606993 987 ntBASIC18.59■□□□□ 0.57
CBX4O00257 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.59■□□□□ 0.57
CBX4O00257 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX4O00257 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.59■□□□□ 0.57
CBX4O00257 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CBX4O00257 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.59■□□□□ 0.57
CBX4O00257 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX4O00257 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CBX4O00257 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX4O00257 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CBX4O00257 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CBX4O00257 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CBX4O00257 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CBX4O00257 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.58■□□□□ 0.57
CBX4O00257 AC016734.2-201ENST00000624325 1377 ntBASIC18.58■□□□□ 0.57
CBX4O00257 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.58■□□□□ 0.57
CBX4O00257 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CBX4O00257 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
CBX4O00257 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CBX4O00257 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CBX4O00257 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.58■□□□□ 0.56
CBX4O00257 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.58■□□□□ 0.56
CBX4O00257 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.58■□□□□ 0.56
CBX4O00257 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CBX4O00257 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CBX4O00257 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.58■□□□□ 0.56
CBX4O00257 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
CBX4O00257 AC004263.2-201ENST00000617183 678 ntBASIC18.58■□□□□ 0.56
CBX4O00257 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.58■□□□□ 0.56
CBX4O00257 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CBX4O00257 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
CBX4O00257 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CBX4O00257 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CBX4O00257 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CBX4O00257 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CBX4O00257 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CBX4O00257 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CBX4O00257 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CBX4O00257 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms