Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
LINC00477Q96M19 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00477Q96M19 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 AC067852.2-201ENST00000590513 2313 ntBASIC13.69□□□□□ -0.22
LINC00477Q96M19 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 ABHD17AP1-201ENST00000358206 933 ntBASIC13.69□□□□□ -0.22
LINC00477Q96M19 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 RPS2P55-201ENST00000397318 883 ntBASIC13.69□□□□□ -0.22
LINC00477Q96M19 AC012618.2-201ENST00000428058 849 ntBASIC13.69□□□□□ -0.22
LINC00477Q96M19 AC107956.1-201ENST00000494359 873 ntBASIC13.69□□□□□ -0.22
LINC00477Q96M19 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 AC142381.4-202ENST00000563973 229 ntBASIC13.69□□□□□ -0.22
LINC00477Q96M19 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 AC134043.2-201ENST00000624206 2238 ntBASIC13.69□□□□□ -0.22
LINC00477Q96M19 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 HOXB1-202ENST00000577092 1414 ntBASIC13.69□□□□□ -0.22
LINC00477Q96M19 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 AC036111.1-201ENST00000533973 1582 ntBASIC13.69□□□□□ -0.22
LINC00477Q96M19 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC13.69□□□□□ -0.22
LINC00477Q96M19 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00477Q96M19 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 PXK-206ENST00000463280 2825 ntTSL 2 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 GRAP-204ENST00000573099 846 ntTSL 3 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 PHGDH-209ENST00000641074 1780 ntBASIC13.68□□□□□ -0.22
LINC00477Q96M19 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms