Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.51■□□□□ 0.39
COL28A1Q2UY09 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 TEX21P-204ENST00000641479 1693 ntBASIC17.51■□□□□ 0.39
COL28A1Q2UY09 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 AC036111.1-201ENST00000533973 1582 ntBASIC17.5■□□□□ 0.39
COL28A1Q2UY09 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 GPX1P2-201ENST00000429271 606 ntBASIC17.5■□□□□ 0.39
COL28A1Q2UY09 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 AC004967.1-201ENST00000453589 447 ntBASIC17.5■□□□□ 0.39
COL28A1Q2UY09 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 AC005332.3-201ENST00000589904 676 ntBASIC17.5■□□□□ 0.39
COL28A1Q2UY09 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 NSUN5P1-202ENST00000421140 1535 ntBASIC17.5■□□□□ 0.39
COL28A1Q2UY09 NSUN5P2-203ENST00000457352 1529 ntBASIC17.5■□□□□ 0.39
COL28A1Q2UY09 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 NEFHP1-201ENST00000412845 2629 ntBASIC17.5■□□□□ 0.39
COL28A1Q2UY09 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL28A1Q2UY09 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 MIR3687-2-201ENST00000577708 61 ntBASIC17.49■□□□□ 0.39
COL28A1Q2UY09 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 MIR3687-1-201ENST00000614492 61 ntBASIC17.49■□□□□ 0.39
COL28A1Q2UY09 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.49■□□□□ 0.39
COL28A1Q2UY09 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL28A1Q2UY09 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms