Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.45■□□□□ 0.7
SOX4Q06945 AC026396.1-201ENST00000419388 421 ntBASIC19.45■□□□□ 0.7
SOX4Q06945 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.45■□□□□ 0.7
SOX4Q06945 MTCL1P1-201ENST00000446207 792 ntBASIC19.45■□□□□ 0.7
SOX4Q06945 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.45■□□□□ 0.7
SOX4Q06945 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.45■□□□□ 0.7
SOX4Q06945 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SOX4Q06945 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SOX4Q06945 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.45■□□□□ 0.7
SOX4Q06945 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.44■□□□□ 0.7
SOX4Q06945 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX4Q06945 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SOX4Q06945 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX4Q06945 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SOX4Q06945 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SOX4Q06945 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX4Q06945 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SOX4Q06945 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.44■□□□□ 0.7
SOX4Q06945 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.44■□□□□ 0.7
SOX4Q06945 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX4Q06945 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
SOX4Q06945 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SOX4Q06945 NUS1P2-201ENST00000417358 873 ntBASIC19.44■□□□□ 0.7
SOX4Q06945 MINOS1P3-201ENST00000457048 203 ntBASIC19.44■□□□□ 0.7
SOX4Q06945 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.44■□□□□ 0.7
SOX4Q06945 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SOX4Q06945 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SOX4Q06945 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX4Q06945 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.44■□□□□ 0.7
SOX4Q06945 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.44■□□□□ 0.7
SOX4Q06945 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX4Q06945 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX4Q06945 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SOX4Q06945 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX4Q06945 AC004408.2-201ENST00000623613 2777 ntBASIC19.44■□□□□ 0.7
SOX4Q06945 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX4Q06945 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.43■□□□□ 0.7
SOX4Q06945 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.43■□□□□ 0.7
SOX4Q06945 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.43■□□□□ 0.7
SOX4Q06945 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SOX4Q06945 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.43■□□□□ 0.7
SOX4Q06945 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX4Q06945 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.43■□□□□ 0.7
SOX4Q06945 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SOX4Q06945 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SOX4Q06945 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SOX4Q06945 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.43■□□□□ 0.7
SOX4Q06945 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX4Q06945 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.43■□□□□ 0.7
SOX4Q06945 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX4Q06945 KRT18P65-201ENST00000439811 1286 ntBASIC19.43■□□□□ 0.7
SOX4Q06945 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.43■□□□□ 0.7
SOX4Q06945 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.43■□□□□ 0.7
SOX4Q06945 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SOX4Q06945 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.43■□□□□ 0.7
SOX4Q06945 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX4Q06945 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.43■□□□□ 0.7
SOX4Q06945 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SOX4Q06945 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SOX4Q06945 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX4Q06945 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX4Q06945 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX4Q06945 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX4Q06945 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX4Q06945 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX4Q06945 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX4Q06945 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SOX4Q06945 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SOX4Q06945 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX4Q06945 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX4Q06945 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX4Q06945 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX4Q06945 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SOX4Q06945 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.42■□□□□ 0.7
SOX4Q06945 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SOX4Q06945 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.42■□□□□ 0.7
SOX4Q06945 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.42■□□□□ 0.7
SOX4Q06945 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.42■□□□□ 0.7
SOX4Q06945 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.42■□□□□ 0.7
SOX4Q06945 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.42■□□□□ 0.7
SOX4Q06945 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.42■□□□□ 0.7
SOX4Q06945 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.42■□□□□ 0.7
SOX4Q06945 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.42■□□□□ 0.7
SOX4Q06945 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SOX4Q06945 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SOX4Q06945 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.41■□□□□ 0.7
SOX4Q06945 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX4Q06945 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX4Q06945 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SOX4Q06945 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SOX4Q06945 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX4Q06945 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.41■□□□□ 0.7
SOX4Q06945 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.41■□□□□ 0.7
SOX4Q06945 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX4Q06945 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SOX4Q06945 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX4Q06945 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX4Q06945 AKR1C7P-201ENST00000305623 895 ntBASIC19.41■□□□□ 0.7
SOX4Q06945 AC004870.1-201ENST00000315132 882 ntBASIC19.41■□□□□ 0.7
SOX4Q06945 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms