Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RPS20-210ENST00000523936 899 ntTSL 2 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 AC138028.4-201ENST00000564984 1845 ntBASIC13.94□□□□□ -0.18
HLA-DMBP28068 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 AC096733.2-201ENST00000609937 1394 ntBASIC13.94□□□□□ -0.18
HLA-DMBP28068 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HLA-DMBP28068 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HLA-DMBP28068 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HLA-DMBP28068 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HLA-DMBP28068 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HLA-DMBP28068 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 KRT8P50-201ENST00000562022 1438 ntBASIC13.93□□□□□ -0.18
HLA-DMBP28068 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HLA-DMBP28068 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 CRYGFP-201ENST00000418459 633 ntBASIC13.93□□□□□ -0.18
HLA-DMBP28068 AC116562.2-201ENST00000507042 360 ntBASIC13.93□□□□□ -0.18
HLA-DMBP28068 KRT18P41-201ENST00000518924 1277 ntBASIC13.93□□□□□ -0.18
HLA-DMBP28068 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 LINC01023-201ENST00000606054 436 ntBASIC13.93□□□□□ -0.18
HLA-DMBP28068 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC13.93□□□□□ -0.18
HLA-DMBP28068 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HLA-DMBP28068 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HLA-DMBP28068 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
HLA-DMBP28068 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HLA-DMBP28068 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
HLA-DMBP28068 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 AC020916.1-201ENST00000587762 1774 ntBASIC13.92□□□□□ -0.18
HLA-DMBP28068 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 MIR4674-201ENST00000582457 87 ntBASIC13.92□□□□□ -0.18
HLA-DMBP28068 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 REXO1L10P-201ENST00000615707 1290 ntBASIC13.92□□□□□ -0.18
HLA-DMBP28068 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 AC133561.5-201ENST00000635547 218 ntBASIC13.92□□□□□ -0.18
HLA-DMBP28068 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 PKD1P1-201ENST00000458669 6805 ntBASIC13.92□□□□□ -0.18
HLA-DMBP28068 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms