Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
PCF11O94913 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC28.32■■■□□ 2.12
PCF11O94913 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC28.32■■■□□ 2.12
PCF11O94913 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.12
PCF11O94913 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC28.32■■■□□ 2.12
PCF11O94913 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC28.32■■■□□ 2.12
PCF11O94913 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC28.32■■■□□ 2.12
PCF11O94913 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
PCF11O94913 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
PCF11O94913 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC28.32■■■□□ 2.12
PCF11O94913 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC28.32■■■□□ 2.12
PCF11O94913 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
PCF11O94913 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC28.32■■■□□ 2.12
PCF11O94913 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC28.32■■■□□ 2.12
PCF11O94913 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC28.32■■■□□ 2.12
PCF11O94913 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC28.32■■■□□ 2.12
PCF11O94913 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC28.32■■■□□ 2.12
PCF11O94913 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
PCF11O94913 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
PCF11O94913 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
PCF11O94913 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
PCF11O94913 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
PCF11O94913 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
PCF11O94913 AF186996.4-201ENST00000467186 377 ntBASIC28.31■■■□□ 2.12
PCF11O94913 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC28.31■■■□□ 2.12
PCF11O94913 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC28.31■■■□□ 2.12
PCF11O94913 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC28.31■■■□□ 2.12
PCF11O94913 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC28.31■■■□□ 2.12
PCF11O94913 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC28.31■■■□□ 2.12
PCF11O94913 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC28.31■■■□□ 2.12
PCF11O94913 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
PCF11O94913 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
PCF11O94913 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
PCF11O94913 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC28.3■■■□□ 2.12
PCF11O94913 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
PCF11O94913 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
PCF11O94913 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
PCF11O94913 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC28.3■■■□□ 2.12
PCF11O94913 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
PCF11O94913 AC005104.2-201ENST00000427818 678 ntBASIC28.3■■■□□ 2.12
PCF11O94913 AC007967.3-201ENST00000434308 558 ntBASIC28.3■■■□□ 2.12
PCF11O94913 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
PCF11O94913 AC073648.2-201ENST00000510116 352 ntBASIC28.3■■■□□ 2.12
PCF11O94913 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC28.3■■■□□ 2.12
PCF11O94913 IRF8-202ENST00000562492 946 ntTSL 3 BASIC28.3■■■□□ 2.12
PCF11O94913 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
PCF11O94913 AL691403.2-201ENST00000618460 490 ntBASIC28.3■■■□□ 2.12
PCF11O94913 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
PCF11O94913 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
PCF11O94913 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC28.3■■■□□ 2.12
PCF11O94913 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC28.3■■■□□ 2.12
PCF11O94913 GMCL1P1-201ENST00000463439 1581 ntBASIC28.3■■■□□ 2.12
PCF11O94913 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC28.3■■■□□ 2.12
PCF11O94913 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
PCF11O94913 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
PCF11O94913 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC28.29■■■□□ 2.12
PCF11O94913 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
PCF11O94913 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC28.29■■■□□ 2.12
PCF11O94913 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
PCF11O94913 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
PCF11O94913 PAN3-AS1-201ENST00000563843 1351 ntBASIC28.29■■■□□ 2.12
PCF11O94913 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC28.29■■■□□ 2.12
PCF11O94913 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
PCF11O94913 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
PCF11O94913 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PCF11O94913 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PCF11O94913 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
PCF11O94913 AC132008.2-207ENST00000454517 770 ntBASIC28.28■■■□□ 2.12
PCF11O94913 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC28.28■■■□□ 2.12
PCF11O94913 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC28.28■■■□□ 2.12
PCF11O94913 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC28.28■■■□□ 2.12
PCF11O94913 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PCF11O94913 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PCF11O94913 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PCF11O94913 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PCF11O94913 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PCF11O94913 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC28.28■■■□□ 2.12
PCF11O94913 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
PCF11O94913 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
PCF11O94913 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PCF11O94913 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PCF11O94913 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
PCF11O94913 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
PCF11O94913 LITAF-211ENST00000572255 516 ntTSL 4 BASIC28.28■■■□□ 2.12
PCF11O94913 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC28.28■■■□□ 2.12
PCF11O94913 AC025062.2-201ENST00000605477 670 ntBASIC28.28■■■□□ 2.12
PCF11O94913 AL139288.1-201ENST00000623748 933 ntBASIC28.28■■■□□ 2.12
PCF11O94913 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC28.28■■■□□ 2.12
PCF11O94913 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC28.27■■■□□ 2.12
PCF11O94913 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCF11O94913 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCF11O94913 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCF11O94913 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
PCF11O94913 AC010460.3-201ENST00000511359 1579 ntBASIC28.27■■■□□ 2.12
PCF11O94913 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCF11O94913 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC28.27■■■□□ 2.12
PCF11O94913 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC28.27■■■□□ 2.12
PCF11O94913 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCF11O94913 HIST2H3DP1-201ENST00000401004 416 ntBASIC28.27■■■□□ 2.12
PCF11O94913 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms