Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 AC009102.3-201ENST00000623118 1491 ntBASIC18.84■□□□□ 0.61
USP29Q9HBJ7 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 AC020916.1-201ENST00000587762 1774 ntBASIC18.83■□□□□ 0.61
USP29Q9HBJ7 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.83■□□□□ 0.61
USP29Q9HBJ7 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP29Q9HBJ7 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP29Q9HBJ7 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP29Q9HBJ7 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP29Q9HBJ7 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.83■□□□□ 0.6
USP29Q9HBJ7 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
USP29Q9HBJ7 AC117947.1-201ENST00000427448 529 ntBASIC18.83■□□□□ 0.6
USP29Q9HBJ7 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP29Q9HBJ7 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.83■□□□□ 0.6
USP29Q9HBJ7 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
USP29Q9HBJ7 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP29Q9HBJ7 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
USP29Q9HBJ7 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
USP29Q9HBJ7 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
USP29Q9HBJ7 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP29Q9HBJ7 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.83■□□□□ 0.6
USP29Q9HBJ7 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 COX11P1-201ENST00000489116 835 ntBASIC18.82■□□□□ 0.6
USP29Q9HBJ7 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 AC104390.1-201ENST00000555663 520 ntBASIC18.82■□□□□ 0.6
USP29Q9HBJ7 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP29Q9HBJ7 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.81■□□□□ 0.6
USP29Q9HBJ7 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 AC020763.4-201ENST00000623414 4170 ntBASIC18.81■□□□□ 0.6
USP29Q9HBJ7 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP29Q9HBJ7 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 SLC25A6P5-201ENST00000435663 894 ntBASIC18.8■□□□□ 0.6
USP29Q9HBJ7 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.8■□□□□ 0.6
USP29Q9HBJ7 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms