Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HLA-DOAP06340 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
HLA-DOAP06340 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
HLA-DOAP06340 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HLA-DOAP06340 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.51■■□□□ 1.03
HLA-DOAP06340 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HLA-DOAP06340 AC079781.3-201ENST00000449110 356 ntBASIC21.51■■□□□ 1.03
HLA-DOAP06340 AC068472.1-201ENST00000474589 881 ntBASIC21.51■■□□□ 1.03
HLA-DOAP06340 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC21.51■■□□□ 1.03
HLA-DOAP06340 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC21.51■■□□□ 1.03
HLA-DOAP06340 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC21.51■■□□□ 1.03
HLA-DOAP06340 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.51■■□□□ 1.03
HLA-DOAP06340 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
HLA-DOAP06340 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HLA-DOAP06340 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
HLA-DOAP06340 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HLA-DOAP06340 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.5■■□□□ 1.03
HLA-DOAP06340 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DOAP06340 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DOAP06340 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DOAP06340 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DOAP06340 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC21.5■■□□□ 1.03
HLA-DOAP06340 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DOAP06340 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DOAP06340 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC21.5■■□□□ 1.03
HLA-DOAP06340 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC21.5■■□□□ 1.03
HLA-DOAP06340 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.5■■□□□ 1.03
HLA-DOAP06340 AC096582.2-201ENST00000510860 516 ntBASIC21.5■■□□□ 1.03
HLA-DOAP06340 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC21.5■■□□□ 1.03
HLA-DOAP06340 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC21.5■■□□□ 1.03
HLA-DOAP06340 BNIP3P18-201ENST00000593976 575 ntBASIC21.5■■□□□ 1.03
HLA-DOAP06340 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DOAP06340 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.5■■□□□ 1.03
HLA-DOAP06340 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DOAP06340 LINC00602-201ENST00000629776 2065 ntBASIC21.5■■□□□ 1.03
HLA-DOAP06340 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DOAP06340 SLC25A24-204ENST00000569674 2357 ntBASIC21.5■■□□□ 1.03
HLA-DOAP06340 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HLA-DOAP06340 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HLA-DOAP06340 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
HLA-DOAP06340 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
HLA-DOAP06340 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HLA-DOAP06340 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
HLA-DOAP06340 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HLA-DOAP06340 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
HLA-DOAP06340 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HLA-DOAP06340 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HLA-DOAP06340 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
HLA-DOAP06340 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC21.49■■□□□ 1.03
HLA-DOAP06340 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC21.49■■□□□ 1.03
HLA-DOAP06340 AL160237.2-201ENST00000556165 472 ntBASIC21.49■■□□□ 1.03
HLA-DOAP06340 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HLA-DOAP06340 AC104692.2-201ENST00000603054 253 ntBASIC21.49■■□□□ 1.03
HLA-DOAP06340 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
HLA-DOAP06340 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
HLA-DOAP06340 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HLA-DOAP06340 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HLA-DOAP06340 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HLA-DOAP06340 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.49■■□□□ 1.03
HLA-DOAP06340 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HLA-DOAP06340 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
HLA-DOAP06340 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HLA-DOAP06340 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC21.48■■□□□ 1.03
HLA-DOAP06340 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HLA-DOAP06340 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.48■■□□□ 1.03
HLA-DOAP06340 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
HLA-DOAP06340 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC21.48■■□□□ 1.03
HLA-DOAP06340 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC21.48■■□□□ 1.03
HLA-DOAP06340 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HLA-DOAP06340 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HLA-DOAP06340 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HLA-DOAP06340 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
HLA-DOAP06340 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC21.48■■□□□ 1.03
HLA-DOAP06340 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
HLA-DOAP06340 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
HLA-DOAP06340 AL121912.1-201ENST00000603683 238 ntBASIC21.48■■□□□ 1.03
HLA-DOAP06340 IGHV3OR16-7-201ENST00000604106 360 ntBASIC21.48■■□□□ 1.03
HLA-DOAP06340 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HLA-DOAP06340 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HLA-DOAP06340 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HLA-DOAP06340 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HLA-DOAP06340 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
HLA-DOAP06340 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HLA-DOAP06340 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
HLA-DOAP06340 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HLA-DOAP06340 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HLA-DOAP06340 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
HLA-DOAP06340 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HLA-DOAP06340 AC005082.1-201ENST00000413042 2259 ntBASIC21.47■■□□□ 1.03
HLA-DOAP06340 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HLA-DOAP06340 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC21.47■■□□□ 1.03
HLA-DOAP06340 SAPCD2P3-201ENST00000455031 850 ntBASIC21.47■■□□□ 1.03
HLA-DOAP06340 AC009078.2-202ENST00000463353 338 ntBASIC21.47■■□□□ 1.03
HLA-DOAP06340 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC21.47■■□□□ 1.03
HLA-DOAP06340 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
HLA-DOAP06340 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC21.47■■□□□ 1.03
HLA-DOAP06340 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC21.47■■□□□ 1.03
HLA-DOAP06340 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC21.47■■□□□ 1.03
HLA-DOAP06340 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC21.47■■□□□ 1.03
HLA-DOAP06340 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms