Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC30.57■■■□□ 2.48
CUX1P39880 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CUX1P39880 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CUX1P39880 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CUX1P39880 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CUX1P39880 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CUX1P39880 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
CUX1P39880 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CUX1P39880 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC30.56■■■□□ 2.48
CUX1P39880 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CUX1P39880 AC112482.1-201ENST00000492080 688 ntBASIC30.56■■■□□ 2.48
CUX1P39880 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
CUX1P39880 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC30.56■■■□□ 2.48
CUX1P39880 AC073592.4-201ENST00000623827 446 ntBASIC30.56■■■□□ 2.48
CUX1P39880 AC134684.3-201ENST00000641758 218 ntBASIC30.56■■■□□ 2.48
CUX1P39880 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CUX1P39880 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
CUX1P39880 AC079776.2-201ENST00000641154 1609 ntBASIC30.56■■■□□ 2.48
CUX1P39880 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC30.55■■■□□ 2.48
CUX1P39880 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC30.55■■■□□ 2.48
CUX1P39880 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
CUX1P39880 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC30.55■■■□□ 2.48
CUX1P39880 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC30.55■■■□□ 2.48
CUX1P39880 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CUX1P39880 AC073621.1-201ENST00000392730 636 ntBASIC30.55■■■□□ 2.48
CUX1P39880 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC30.55■■■□□ 2.48
CUX1P39880 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC30.55■■■□□ 2.48
CUX1P39880 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC30.55■■■□□ 2.48
CUX1P39880 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
CUX1P39880 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC30.55■■■□□ 2.48
CUX1P39880 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
CUX1P39880 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
CUX1P39880 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
CUX1P39880 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
CUX1P39880 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CUX1P39880 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC30.55■■■□□ 2.48
CUX1P39880 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CUX1P39880 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
CUX1P39880 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
CUX1P39880 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CUX1P39880 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
CUX1P39880 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
CUX1P39880 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC30.54■■■□□ 2.48
CUX1P39880 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CUX1P39880 SOD2-201ENST00000337404 991 ntTSL 2 BASIC30.54■■■□□ 2.48
CUX1P39880 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC30.54■■■□□ 2.48
CUX1P39880 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CUX1P39880 AC007967.3-201ENST00000434308 558 ntBASIC30.54■■■□□ 2.48
CUX1P39880 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC30.54■■■□□ 2.48
CUX1P39880 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
CUX1P39880 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CUX1P39880 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC30.54■■■□□ 2.48
CUX1P39880 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC30.54■■■□□ 2.48
CUX1P39880 EFS-203ENST00000429593 2610 ntTSL 2 BASIC30.54■■■□□ 2.48
CUX1P39880 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC30.54■■■□□ 2.48
CUX1P39880 DNAJB3-201ENST00000446806 729 ntBASIC30.53■■■□□ 2.48
CUX1P39880 ETFA-208ENST00000559602 792 ntTSL 3 BASIC30.53■■■□□ 2.48
CUX1P39880 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC30.53■■■□□ 2.48
CUX1P39880 AC022898.2-201ENST00000616822 1312 ntBASIC30.53■■■□□ 2.48
CUX1P39880 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
CUX1P39880 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
CUX1P39880 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
CUX1P39880 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
CUX1P39880 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC30.53■■■□□ 2.48
CUX1P39880 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC30.52■■■□□ 2.48
CUX1P39880 AP006288.1-201ENST00000446065 395 ntBASIC30.52■■■□□ 2.48
CUX1P39880 DNAJB3-202ENST00000449667 1266 ntBASIC30.52■■■□□ 2.48
CUX1P39880 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
CUX1P39880 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC30.52■■■□□ 2.48
CUX1P39880 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC30.52■■■□□ 2.48
CUX1P39880 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC30.52■■■□□ 2.48
CUX1P39880 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
CUX1P39880 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC30.52■■■□□ 2.48
CUX1P39880 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC30.52■■■□□ 2.48
CUX1P39880 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
CUX1P39880 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC30.52■■■□□ 2.48
CUX1P39880 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC30.52■■■□□ 2.48
CUX1P39880 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC30.52■■■□□ 2.48
CUX1P39880 RNA5SP416-201ENST00000516838 111 ntBASIC30.52■■■□□ 2.48
CUX1P39880 AC002347.1-201ENST00000569543 541 ntBASIC30.52■■■□□ 2.48
CUX1P39880 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
CUX1P39880 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.48
CUX1P39880 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC30.51■■■□□ 2.48
CUX1P39880 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC30.51■■■□□ 2.47
CUX1P39880 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
CUX1P39880 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC30.51■■■□□ 2.47
CUX1P39880 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
CUX1P39880 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
CUX1P39880 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC30.51■■■□□ 2.47
CUX1P39880 ALG1L5P-201ENST00000482043 771 ntBASIC30.51■■■□□ 2.47
CUX1P39880 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
CUX1P39880 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
CUX1P39880 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC30.51■■■□□ 2.47
CUX1P39880 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
CUX1P39880 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC30.5■■■□□ 2.47
CUX1P39880 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
CUX1P39880 USP48-205ENST00000421625 2818 ntTSL 2 BASIC30.5■■■□□ 2.47
CUX1P39880 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
CUX1P39880 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC30.5■■■□□ 2.47
CUX1P39880 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms