Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL5A1P20908 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL5A1P20908 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL5A1P20908 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
COL5A1P20908 AC125634.1-201ENST00000438758 1403 ntBASIC17.52■□□□□ 0.39
COL5A1P20908 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.51■□□□□ 0.39
COL5A1P20908 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A1P20908 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.51■□□□□ 0.39
COL5A1P20908 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A1P20908 UPF3AP3-201ENST00000420996 769 ntBASIC17.51■□□□□ 0.39
COL5A1P20908 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.51■□□□□ 0.39
COL5A1P20908 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.51■□□□□ 0.39
COL5A1P20908 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.51■□□□□ 0.39
COL5A1P20908 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.51■□□□□ 0.39
COL5A1P20908 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A1P20908 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A1P20908 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A1P20908 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A1P20908 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A1P20908 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A1P20908 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.51■□□□□ 0.39
COL5A1P20908 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.51■□□□□ 0.39
COL5A1P20908 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A1P20908 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A1P20908 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A1P20908 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
COL5A1P20908 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A1P20908 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A1P20908 RPS2P1-201ENST00000434010 821 ntBASIC17.51■□□□□ 0.39
COL5A1P20908 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.51■□□□□ 0.39
COL5A1P20908 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.51■□□□□ 0.39
COL5A1P20908 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.51■□□□□ 0.39
COL5A1P20908 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.51■□□□□ 0.39
COL5A1P20908 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A1P20908 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.51■□□□□ 0.39
COL5A1P20908 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A1P20908 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A1P20908 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A1P20908 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A1P20908 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A1P20908 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
COL5A1P20908 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A1P20908 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A1P20908 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A1P20908 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A1P20908 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A1P20908 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.5■□□□□ 0.39
COL5A1P20908 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.5■□□□□ 0.39
COL5A1P20908 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.5■□□□□ 0.39
COL5A1P20908 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.5■□□□□ 0.39
COL5A1P20908 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
COL5A1P20908 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A1P20908 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A1P20908 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
COL5A1P20908 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A1P20908 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A1P20908 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
COL5A1P20908 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A1P20908 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.49■□□□□ 0.39
COL5A1P20908 MTCL1P1-201ENST00000446207 792 ntBASIC17.49■□□□□ 0.39
COL5A1P20908 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.49■□□□□ 0.39
COL5A1P20908 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.49■□□□□ 0.39
COL5A1P20908 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.49■□□□□ 0.39
COL5A1P20908 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.49■□□□□ 0.39
COL5A1P20908 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
COL5A1P20908 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.49■□□□□ 0.39
COL5A1P20908 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
COL5A1P20908 RPSAP43-201ENST00000402237 625 ntBASIC17.49■□□□□ 0.39
COL5A1P20908 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.49■□□□□ 0.39
COL5A1P20908 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.49■□□□□ 0.39
COL5A1P20908 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.49■□□□□ 0.39
COL5A1P20908 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
COL5A1P20908 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A1P20908 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
COL5A1P20908 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.48■□□□□ 0.39
COL5A1P20908 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A1P20908 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL5A1P20908 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.48■□□□□ 0.39
COL5A1P20908 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A1P20908 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A1P20908 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms