Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC018445.3-201ENST00000624177 1945 ntBASIC17.82■□□□□ 0.44
HOXC4P09017 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HOXC4P09017 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 AC004870.1-201ENST00000315132 882 ntBASIC17.81■□□□□ 0.44
HOXC4P09017 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.81■□□□□ 0.44
HOXC4P09017 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.81■□□□□ 0.44
HOXC4P09017 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.81■□□□□ 0.44
HOXC4P09017 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.81■□□□□ 0.44
HOXC4P09017 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.81■□□□□ 0.44
HOXC4P09017 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.81■□□□□ 0.44
HOXC4P09017 IFNL4P1-201ENST00000607083 540 ntBASIC17.81■□□□□ 0.44
HOXC4P09017 AC099343.3-201ENST00000605834 2503 ntBASIC17.81■□□□□ 0.44
HOXC4P09017 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.81■□□□□ 0.44
HOXC4P09017 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
HOXC4P09017 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.81■□□□□ 0.44
HOXC4P09017 ESPNP-201ENST00000270691 2015 ntBASIC17.81■□□□□ 0.44
HOXC4P09017 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HOXC4P09017 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.8■□□□□ 0.44
HOXC4P09017 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
HOXC4P09017 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.8■□□□□ 0.44
HOXC4P09017 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
HOXC4P09017 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.8■□□□□ 0.44
HOXC4P09017 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.8■□□□□ 0.44
HOXC4P09017 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.8■□□□□ 0.44
HOXC4P09017 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 AL121894.2-201ENST00000602977 491 ntBASIC17.8■□□□□ 0.44
HOXC4P09017 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.8■□□□□ 0.44
HOXC4P09017 AL732292.2-201ENST00000609649 430 ntBASIC17.8■□□□□ 0.44
HOXC4P09017 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
HOXC4P09017 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.8■□□□□ 0.44
HOXC4P09017 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HOXC4P09017 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HOXC4P09017 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.79■□□□□ 0.44
HOXC4P09017 AC005082.1-201ENST00000413042 2259 ntBASIC17.79■□□□□ 0.44
HOXC4P09017 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.79■□□□□ 0.44
HOXC4P09017 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.79■□□□□ 0.44
HOXC4P09017 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
HOXC4P09017 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
HOXC4P09017 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.79■□□□□ 0.44
HOXC4P09017 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC4P09017 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC4P09017 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC4P09017 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC4P09017 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
HOXC4P09017 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.79■□□□□ 0.44
HOXC4P09017 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.79■□□□□ 0.44
HOXC4P09017 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.79■□□□□ 0.44
HOXC4P09017 AC009533.2-201ENST00000543664 586 ntBASIC17.79■□□□□ 0.44
HOXC4P09017 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.79■□□□□ 0.44
HOXC4P09017 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.79■□□□□ 0.44
HOXC4P09017 AC005336.2-201ENST00000593183 939 ntBASIC17.79■□□□□ 0.44
HOXC4P09017 BNIP3P18-201ENST00000593976 575 ntBASIC17.79■□□□□ 0.44
HOXC4P09017 AC138894.3-201ENST00000603787 634 ntBASIC17.79■□□□□ 0.44
HOXC4P09017 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC4P09017 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC4P09017 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
HOXC4P09017 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.79■□□□□ 0.44
HOXC4P09017 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
HOXC4P09017 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC4P09017 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC4P09017 AP000974.1-201ENST00000623909 2387 ntBASIC17.79■□□□□ 0.44
HOXC4P09017 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.79■□□□□ 0.44
HOXC4P09017 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
HOXC4P09017 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.79■□□□□ 0.44
HOXC4P09017 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC4P09017 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms