Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 GAD2-202ENST00000376248 680 ntTSL 5 BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 KRT8P3-201ENST00000519669 1449 ntBASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 PWWP2AP1-201ENST00000429776 2273 ntBASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 MRPL3P1-201ENST00000400109 1033 ntBASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 KRT8P26-201ENST00000534154 1276 ntBASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 AC087289.5-201ENST00000586076 3175 ntBASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 SLC25A24-204ENST00000569674 2357 ntBASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 AC120114.3-201ENST00000611923 658 ntBASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
NOTCH3Q9UM47 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 RNA5SP419-201ENST00000515908 135 ntBASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 MCCD1P1-208ENST00000445732 328 ntBASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
NOTCH3Q9UM47 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
NOTCH3Q9UM47 BID-204ENST00000399767 2129 ntTSL 2 BASIC14.15□□□□□ -0.15
NOTCH3Q9UM47 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms