Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 KRT16P5-201ENST00000455284 522 ntBASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 RPS2P4-201ENST00000476944 856 ntBASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 ITM2C-210ENST00000620962 501 ntBASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 FLJ13224-201ENST00000313737 1514 ntBASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 AC141586.5-201ENST00000624546 2050 ntBASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMARCAL1Q9NZC9 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
SMARCAL1Q9NZC9 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SMARCAL1Q9NZC9 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
SMARCAL1Q9NZC9 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SMARCAL1Q9NZC9 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.33■□□□□ 0.69
SMARCAL1Q9NZC9 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMARCAL1Q9NZC9 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.69
SMARCAL1Q9NZC9 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SMARCAL1Q9NZC9 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
SMARCAL1Q9NZC9 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMARCAL1Q9NZC9 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMARCAL1Q9NZC9 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.69
SMARCAL1Q9NZC9 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.69
SMARCAL1Q9NZC9 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMARCAL1Q9NZC9 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.33■□□□□ 0.69
SMARCAL1Q9NZC9 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCAL1Q9NZC9 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SMARCAL1Q9NZC9 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.33■□□□□ 0.68
SMARCAL1Q9NZC9 C1QBPP2-201ENST00000528754 825 ntBASIC19.33■□□□□ 0.68
SMARCAL1Q9NZC9 AC008622.2-201ENST00000617006 1229 ntBASIC19.33■□□□□ 0.68
SMARCAL1Q9NZC9 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.33■□□□□ 0.68
SMARCAL1Q9NZC9 AC131212.4-201ENST00000623606 975 ntBASIC19.33■□□□□ 0.68
SMARCAL1Q9NZC9 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCAL1Q9NZC9 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCAL1Q9NZC9 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
SMARCAL1Q9NZC9 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
SMARCAL1Q9NZC9 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCAL1Q9NZC9 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCAL1Q9NZC9 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.33■□□□□ 0.68
SMARCAL1Q9NZC9 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMARCAL1Q9NZC9 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 AC124016.1-201ENST00000609552 612 ntBASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 HTR7P1-202ENST00000624664 4411 ntBASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCAL1Q9NZC9 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms