Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.52■□□□□ 0.56
TTC28Q96AY4 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
TTC28Q96AY4 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
TTC28Q96AY4 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
TTC28Q96AY4 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TTC28Q96AY4 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TTC28Q96AY4 CNN2P2-201ENST00000443536 909 ntBASIC18.52■□□□□ 0.56
TTC28Q96AY4 CNN2P3-201ENST00000450201 906 ntBASIC18.52■□□□□ 0.56
TTC28Q96AY4 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC18.52■□□□□ 0.56
TTC28Q96AY4 AL136317.3-201ENST00000618497 906 ntBASIC18.52■□□□□ 0.56
TTC28Q96AY4 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
TTC28Q96AY4 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TTC28Q96AY4 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TTC28Q96AY4 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TTC28Q96AY4 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
TTC28Q96AY4 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
TTC28Q96AY4 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
TTC28Q96AY4 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.51■□□□□ 0.55
TTC28Q96AY4 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TTC28Q96AY4 IGLL3P-201ENST00000412472 434 ntBASIC18.51■□□□□ 0.55
TTC28Q96AY4 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.51■□□□□ 0.55
TTC28Q96AY4 BASP1P1-201ENST00000430708 665 ntBASIC18.51■□□□□ 0.55
TTC28Q96AY4 AC068472.1-201ENST00000474589 881 ntBASIC18.51■□□□□ 0.55
TTC28Q96AY4 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TTC28Q96AY4 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TTC28Q96AY4 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TTC28Q96AY4 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.51■□□□□ 0.55
TTC28Q96AY4 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.51■□□□□ 0.55
TTC28Q96AY4 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TTC28Q96AY4 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
TTC28Q96AY4 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TTC28Q96AY4 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.51■□□□□ 0.55
TTC28Q96AY4 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.51■□□□□ 0.55
TTC28Q96AY4 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC18.51■□□□□ 0.55
TTC28Q96AY4 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.51■□□□□ 0.55
TTC28Q96AY4 GPR53P-205ENST00000457298 1084 ntBASIC18.51■□□□□ 0.55
TTC28Q96AY4 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC18.51■□□□□ 0.55
TTC28Q96AY4 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.51■□□□□ 0.55
TTC28Q96AY4 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TTC28Q96AY4 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
TTC28Q96AY4 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TTC28Q96AY4 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.51■□□□□ 0.55
TTC28Q96AY4 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.51■□□□□ 0.55
TTC28Q96AY4 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
TTC28Q96AY4 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TTC28Q96AY4 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.5■□□□□ 0.55
TTC28Q96AY4 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TTC28Q96AY4 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
TTC28Q96AY4 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.5■□□□□ 0.55
TTC28Q96AY4 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
TTC28Q96AY4 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TTC28Q96AY4 BX005266.1-201ENST00000473402 457 ntBASIC18.5■□□□□ 0.55
TTC28Q96AY4 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.5■□□□□ 0.55
TTC28Q96AY4 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.5■□□□□ 0.55
TTC28Q96AY4 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.5■□□□□ 0.55
TTC28Q96AY4 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.5■□□□□ 0.55
TTC28Q96AY4 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TTC28Q96AY4 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TTC28Q96AY4 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
TTC28Q96AY4 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TTC28Q96AY4 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.5■□□□□ 0.55
TTC28Q96AY4 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TTC28Q96AY4 CU639417.3-201ENST00000624240 1404 ntBASIC18.5■□□□□ 0.55
TTC28Q96AY4 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.5■□□□□ 0.55
TTC28Q96AY4 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TTC28Q96AY4 AL357033.4-201ENST00000617703 1807 ntBASIC18.5■□□□□ 0.55
TTC28Q96AY4 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TTC28Q96AY4 ADH5P3-201ENST00000433842 1137 ntBASIC18.49■□□□□ 0.55
TTC28Q96AY4 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TTC28Q96AY4 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.49■□□□□ 0.55
TTC28Q96AY4 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.49■□□□□ 0.55
TTC28Q96AY4 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.49■□□□□ 0.55
TTC28Q96AY4 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TTC28Q96AY4 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TTC28Q96AY4 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
TTC28Q96AY4 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TTC28Q96AY4 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TTC28Q96AY4 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.49■□□□□ 0.55
TTC28Q96AY4 HCG4-201ENST00000418983 998 ntBASIC18.49■□□□□ 0.55
TTC28Q96AY4 PRYP5-201ENST00000451909 266 ntBASIC18.49■□□□□ 0.55
TTC28Q96AY4 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TTC28Q96AY4 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.49■□□□□ 0.55
TTC28Q96AY4 AC010507.1-201ENST00000633895 436 ntBASIC18.49■□□□□ 0.55
TTC28Q96AY4 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.49■□□□□ 0.55
TTC28Q96AY4 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TTC28Q96AY4 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TTC28Q96AY4 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.48■□□□□ 0.55
TTC28Q96AY4 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TTC28Q96AY4 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TTC28Q96AY4 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.48■□□□□ 0.55
TTC28Q96AY4 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.48■□□□□ 0.55
TTC28Q96AY4 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TTC28Q96AY4 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TTC28Q96AY4 MIR6805-201ENST00000615055 62 ntBASIC18.48■□□□□ 0.55
TTC28Q96AY4 AC004877.2-201ENST00000623941 599 ntBASIC18.48■□□□□ 0.55
TTC28Q96AY4 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TTC28Q96AY4 PMPCAP1-201ENST00000508114 1576 ntBASIC18.48■□□□□ 0.55
TTC28Q96AY4 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TTC28Q96AY4 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TTC28Q96AY4 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms