Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.63■□□□□ 0.73
VCPP55072 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCPP55072 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCPP55072 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCPP55072 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCPP55072 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
VCPP55072 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCPP55072 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
VCPP55072 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
VCPP55072 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.62■□□□□ 0.73
VCPP55072 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 AC005082.1-201ENST00000413042 2259 ntBASIC19.62■□□□□ 0.73
VCPP55072 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 KRT18P13-201ENST00000400056 1290 ntBASIC19.62■□□□□ 0.73
VCPP55072 BX276092.5-203ENST00000456199 560 ntBASIC19.62■□□□□ 0.73
VCPP55072 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.62■□□□□ 0.73
VCPP55072 NEK4P2-201ENST00000580004 1012 ntBASIC19.62■□□□□ 0.73
VCPP55072 MIR4674-201ENST00000582457 87 ntBASIC19.62■□□□□ 0.73
VCPP55072 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
VCPP55072 AL121672.3-201ENST00000608644 468 ntBASIC19.62■□□□□ 0.73
VCPP55072 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
VCPP55072 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.62■□□□□ 0.73
VCPP55072 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.62■□□□□ 0.73
VCPP55072 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
VCPP55072 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.62■□□□□ 0.73
VCPP55072 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
VCPP55072 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VCPP55072 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VCPP55072 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.61■□□□□ 0.73
VCPP55072 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VCPP55072 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.61■□□□□ 0.73
VCPP55072 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCPP55072 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.61■□□□□ 0.73
VCPP55072 TSPY19P-201ENST00000418461 509 ntBASIC19.61■□□□□ 0.73
VCPP55072 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
VCPP55072 TSPY18P-201ENST00000441642 509 ntBASIC19.61■□□□□ 0.73
VCPP55072 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.61■□□□□ 0.73
VCPP55072 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
VCPP55072 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.61■□□□□ 0.73
VCPP55072 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.61■□□□□ 0.73
VCPP55072 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.61■□□□□ 0.73
VCPP55072 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC19.61■□□□□ 0.73
VCPP55072 AP002414.4-201ENST00000589764 1148 ntBASIC19.61■□□□□ 0.73
VCPP55072 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCPP55072 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
VCPP55072 ANO7L1-203ENST00000602586 1720 ntBASIC19.61■□□□□ 0.73
VCPP55072 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
VCPP55072 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCPP55072 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCPP55072 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
VCPP55072 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
VCPP55072 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCPP55072 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.61■□□□□ 0.73
VCPP55072 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCPP55072 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VCPP55072 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.61■□□□□ 0.73
VCPP55072 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VCPP55072 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCPP55072 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCPP55072 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCPP55072 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.6■□□□□ 0.73
VCPP55072 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
VCPP55072 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCPP55072 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCPP55072 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.6■□□□□ 0.73
VCPP55072 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.6■□□□□ 0.73
VCPP55072 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCPP55072 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19.6■□□□□ 0.73
VCPP55072 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCPP55072 AC106795.1-205ENST00000512851 1056 ntBASIC19.6■□□□□ 0.73
VCPP55072 AP002469.2-201ENST00000531724 424 ntBASIC19.6■□□□□ 0.73
VCPP55072 AC011498.5-201ENST00000592027 486 ntBASIC19.6■□□□□ 0.73
VCPP55072 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VCPP55072 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.6■□□□□ 0.73
VCPP55072 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCPP55072 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCPP55072 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VCPP55072 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
VCPP55072 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCPP55072 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.6■□□□□ 0.73
VCPP55072 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VCPP55072 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCPP55072 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.6■□□□□ 0.73
VCPP55072 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
VCPP55072 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCPP55072 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms