Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.35■■□□□ 1.01
COL2A1P02458 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL2A1P02458 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.35■■□□□ 1.01
COL2A1P02458 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.35■■□□□ 1.01
COL2A1P02458 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL2A1P02458 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC21.35■■□□□ 1.01
COL2A1P02458 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL2A1P02458 MED16-201ENST00000269814 1199 ntTSL 5 BASIC21.35■■□□□ 1.01
COL2A1P02458 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL2A1P02458 AL031284.1-201ENST00000419297 478 ntBASIC21.35■■□□□ 1.01
COL2A1P02458 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
COL2A1P02458 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC21.35■■□□□ 1.01
COL2A1P02458 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL2A1P02458 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC21.35■■□□□ 1.01
COL2A1P02458 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC21.35■■□□□ 1.01
COL2A1P02458 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.35■■□□□ 1.01
COL2A1P02458 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL2A1P02458 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL2A1P02458 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.35■■□□□ 1.01
COL2A1P02458 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL2A1P02458 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL2A1P02458 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.35■■□□□ 1.01
COL2A1P02458 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC21.35■■□□□ 1.01
COL2A1P02458 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL2A1P02458 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.35■■□□□ 1.01
COL2A1P02458 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL2A1P02458 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL2A1P02458 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.34■■□□□ 1.01
COL2A1P02458 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL2A1P02458 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.34■■□□□ 1.01
COL2A1P02458 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
COL2A1P02458 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL2A1P02458 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC21.34■■□□□ 1.01
COL2A1P02458 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC21.34■■□□□ 1.01
COL2A1P02458 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC21.34■■□□□ 1.01
COL2A1P02458 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC21.34■■□□□ 1.01
COL2A1P02458 AC148477.8-201ENST00000624298 468 ntBASIC21.34■■□□□ 1.01
COL2A1P02458 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL2A1P02458 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL2A1P02458 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21.34■■□□□ 1.01
COL2A1P02458 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC21.34■■□□□ 1.01
COL2A1P02458 AC099343.3-201ENST00000605834 2503 ntBASIC21.34■■□□□ 1.01
COL2A1P02458 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC21.34■■□□□ 1.01
COL2A1P02458 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.34■■□□□ 1.01
COL2A1P02458 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.34■■□□□ 1.01
COL2A1P02458 AC132938.6-201ENST00000623828 1655 ntBASIC21.34■■□□□ 1.01
COL2A1P02458 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL2A1P02458 PAN3-AS1-201ENST00000563843 1351 ntBASIC21.34■■□□□ 1.01
COL2A1P02458 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL2A1P02458 IL9RP2-201ENST00000423948 1312 ntBASIC21.34■■□□□ 1.01
COL2A1P02458 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.34■■□□□ 1.01
COL2A1P02458 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL2A1P02458 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL2A1P02458 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL2A1P02458 SCARNA2-201ENST00000458748 420 ntBASIC21.33■■□□□ 1.01
COL2A1P02458 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC21.33■■□□□ 1.01
COL2A1P02458 MOK-208ENST00000519058 917 ntTSL 2 BASIC21.33■■□□□ 1.01
COL2A1P02458 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC21.33■■□□□ 1.01
COL2A1P02458 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL2A1P02458 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL2A1P02458 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL2A1P02458 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL2A1P02458 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL2A1P02458 GMCL1P1-201ENST00000463439 1581 ntBASIC21.33■■□□□ 1
COL2A1P02458 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.33■■□□□ 1
COL2A1P02458 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL2A1P02458 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1
COL2A1P02458 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL2A1P02458 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL2A1P02458 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC21.32■■□□□ 1
COL2A1P02458 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC21.32■■□□□ 1
COL2A1P02458 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC21.32■■□□□ 1
COL2A1P02458 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC21.32■■□□□ 1
COL2A1P02458 AC073648.2-201ENST00000510116 352 ntBASIC21.32■■□□□ 1
COL2A1P02458 AC079776.4-201ENST00000511039 504 ntBASIC21.32■■□□□ 1
COL2A1P02458 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL2A1P02458 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL2A1P02458 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL2A1P02458 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.32■■□□□ 1
COL2A1P02458 AC243591.1-201ENST00000452967 1364 ntBASIC21.32■■□□□ 1
COL2A1P02458 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.32■■□□□ 1
COL2A1P02458 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL2A1P02458 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
COL2A1P02458 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC21.32■■□□□ 1
COL2A1P02458 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
COL2A1P02458 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL2A1P02458 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC21.32■■□□□ 1
COL2A1P02458 HIST2H3DP1-201ENST00000401004 416 ntBASIC21.32■■□□□ 1
COL2A1P02458 AL590627.1-203ENST00000421194 1026 ntBASIC21.32■■□□□ 1
COL2A1P02458 ABCD1P5-201ENST00000445663 754 ntBASIC21.32■■□□□ 1
COL2A1P02458 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC21.32■■□□□ 1
COL2A1P02458 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC21.32■■□□□ 1
COL2A1P02458 COX5A-204ENST00000567270 579 ntTSL 3 BASIC21.32■■□□□ 1
COL2A1P02458 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC21.32■■□□□ 1
COL2A1P02458 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC21.32■■□□□ 1
COL2A1P02458 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.32■■□□□ 1
COL2A1P02458 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.31■■□□□ 1
COL2A1P02458 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
COL2A1P02458 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL2A1P02458 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms