Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 RBM17P3-201ENST00000417687 1192 ntBASIC23.55■■□□□ 1.36
SCN11AQ9UI33 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC23.55■■□□□ 1.36
SCN11AQ9UI33 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC23.55■■□□□ 1.36
SCN11AQ9UI33 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC23.55■■□□□ 1.36
SCN11AQ9UI33 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC23.55■■□□□ 1.36
SCN11AQ9UI33 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
SCN11AQ9UI33 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SCN11AQ9UI33 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
SCN11AQ9UI33 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC23.55■■□□□ 1.36
SCN11AQ9UI33 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SCN11AQ9UI33 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
SCN11AQ9UI33 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
SCN11AQ9UI33 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC23.55■■□□□ 1.36
SCN11AQ9UI33 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC23.55■■□□□ 1.36
SCN11AQ9UI33 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC23.55■■□□□ 1.36
SCN11AQ9UI33 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC23.55■■□□□ 1.36
SCN11AQ9UI33 AC145285.3-201ENST00000564603 959 ntBASIC23.55■■□□□ 1.36
SCN11AQ9UI33 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SCN11AQ9UI33 AC125634.1-201ENST00000438758 1403 ntBASIC23.54■■□□□ 1.36
SCN11AQ9UI33 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC23.54■■□□□ 1.36
SCN11AQ9UI33 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
SCN11AQ9UI33 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
SCN11AQ9UI33 TLE1-202ENST00000376484 666 ntTSL 3 BASIC23.54■■□□□ 1.36
SCN11AQ9UI33 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC23.54■■□□□ 1.36
SCN11AQ9UI33 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC23.54■■□□□ 1.36
SCN11AQ9UI33 AC011467.2-201ENST00000598425 242 ntBASIC23.54■■□□□ 1.36
SCN11AQ9UI33 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SCN11AQ9UI33 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC23.54■■□□□ 1.36
SCN11AQ9UI33 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SCN11AQ9UI33 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
SCN11AQ9UI33 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
SCN11AQ9UI33 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 AC112698.1-201ENST00000510299 916 ntBASIC23.53■■□□□ 1.36
SCN11AQ9UI33 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 PAN3-AS1-201ENST00000563843 1351 ntBASIC23.53■■□□□ 1.36
SCN11AQ9UI33 KRT8P47-201ENST00000604727 1398 ntBASIC23.53■■□□□ 1.36
SCN11AQ9UI33 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SCN11AQ9UI33 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 MIR574-201ENST00000385209 96 ntBASIC23.52■■□□□ 1.36
SCN11AQ9UI33 RCN1P2-201ENST00000398357 915 ntBASIC23.52■■□□□ 1.36
SCN11AQ9UI33 PMS2P1-201ENST00000431037 1228 ntBASIC23.52■■□□□ 1.36
SCN11AQ9UI33 DANCR-204ENST00000444958 709 ntTSL 3 BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 SCARNA2-201ENST00000458748 420 ntBASIC23.52■■□□□ 1.36
SCN11AQ9UI33 AF186996.4-201ENST00000467186 377 ntBASIC23.52■■□□□ 1.36
SCN11AQ9UI33 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 AC009533.2-201ENST00000543664 586 ntBASIC23.52■■□□□ 1.36
SCN11AQ9UI33 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 IRF8-202ENST00000562492 946 ntTSL 3 BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 MIR5100-201ENST00000579544 119 ntBASIC23.52■■□□□ 1.36
SCN11AQ9UI33 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SCN11AQ9UI33 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
SCN11AQ9UI33 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC23.51■■□□□ 1.35
SCN11AQ9UI33 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
SCN11AQ9UI33 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
SCN11AQ9UI33 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
SCN11AQ9UI33 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC23.51■■□□□ 1.35
SCN11AQ9UI33 HNRNPDP1-201ENST00000439535 754 ntBASIC23.51■■□□□ 1.35
SCN11AQ9UI33 SART3-203ENST00000546611 1184 ntBASIC23.51■■□□□ 1.35
SCN11AQ9UI33 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC23.51■■□□□ 1.35
SCN11AQ9UI33 AP005117.1-201ENST00000584346 1413 ntBASIC23.51■■□□□ 1.35
SCN11AQ9UI33 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
SCN11AQ9UI33 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
SCN11AQ9UI33 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SCN11AQ9UI33 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC23.51■■□□□ 1.35
SCN11AQ9UI33 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC23.51■■□□□ 1.35
SCN11AQ9UI33 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
SCN11AQ9UI33 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC23.5■■□□□ 1.35
SCN11AQ9UI33 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
SCN11AQ9UI33 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
SCN11AQ9UI33 AL590627.1-203ENST00000421194 1026 ntBASIC23.5■■□□□ 1.35
SCN11AQ9UI33 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
SCN11AQ9UI33 IGHV3-22-201ENST00000520721 359 ntBASIC23.5■■□□□ 1.35
SCN11AQ9UI33 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC23.5■■□□□ 1.35
SCN11AQ9UI33 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms