Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 AC034236.2-201ENST00000606662 1610 ntBASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 FAM220CP-201ENST00000395253 831 ntBASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.12■□□□□ 0.65
LIMD1Q9UGP4 Z82202.1-201ENST00000623446 1880 ntBASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 BX842568.4-201ENST00000421222 227 ntBASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 COX10-202ENST00000429152 875 ntTSL 2 BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 AC132008.2-207ENST00000454517 770 ntBASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 AC138932.1-201ENST00000534164 6830 ntBASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 TREX1-205ENST00000625293 1783 ntBASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.11■□□□□ 0.65
LIMD1Q9UGP4 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 BNIP3P18-201ENST00000593976 575 ntBASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 AL049840.3-201ENST00000602669 611 ntBASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 AC008608.2-201ENST00000606089 416 ntBASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIMD1Q9UGP4 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms