Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 AC009947.1-201ENST00000444350 727 ntBASIC12.75□□□□□ -0.37
CSMD3Q7Z407 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 OR7E14P-202ENST00000530490 1290 ntBASIC12.75□□□□□ -0.37
CSMD3Q7Z407 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 RPL28-205ENST00000558131 444 ntTSL 5 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 MTDHP5-201ENST00000598980 586 ntBASIC12.75□□□□□ -0.37
CSMD3Q7Z407 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 AL158211.5-201ENST00000623583 2518 ntBASIC12.74□□□□□ -0.37
CSMD3Q7Z407 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 AC023274.1-201ENST00000418278 595 ntBASIC12.74□□□□□ -0.37
CSMD3Q7Z407 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 CRCP-205ENST00000431089 942 ntTSL 2 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 KRT8P50-201ENST00000562022 1438 ntBASIC12.74□□□□□ -0.37
CSMD3Q7Z407 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 Z83851.2-201ENST00000609564 659 ntBASIC12.74□□□□□ -0.37
CSMD3Q7Z407 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 ORC5-208ENST00000626700 344 ntTSL 3 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
CSMD3Q7Z407 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 THAP5-204ENST00000438865 868 ntTSL 2 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 AC040169.1-201ENST00000565382 521 ntBASIC12.73□□□□□ -0.37
CSMD3Q7Z407 PNMT-203ENST00000581428 677 ntTSL 2 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 ME2-218ENST00000640965 2476 ntTSL 5 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 AL163051.1-201ENST00000569214 1512 ntBASIC12.73□□□□□ -0.37
CSMD3Q7Z407 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 AL499627.1-201ENST00000569373 2188 ntBASIC12.73□□□□□ -0.37
CSMD3Q7Z407 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 LHX6-205ENST00000464484 666 ntTSL 2 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 AC002347.1-201ENST00000569543 541 ntBASIC12.73□□□□□ -0.37
CSMD3Q7Z407 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 Z98044.1-201ENST00000632503 1764 ntBASIC12.73□□□□□ -0.37
CSMD3Q7Z407 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
CSMD3Q7Z407 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms