Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 AC007274.1-201ENST00000439805 662 ntBASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 RCC2P3-201ENST00000418112 1537 ntBASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 AC087641.1-201ENST00000557561 1021 ntBASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 AL512353.2-201ENST00000448759 1962 ntBASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 AC020907.5-201ENST00000624372 1936 ntBASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 PALM-208ENST00000592155 2272 ntTSL 4 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 AC097374.2-201ENST00000618617 1306 ntBASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 ELL2P1-201ENST00000413990 1906 ntBASIC16.49■□□□□ 0.23
COL6A6A6NMZ7 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 KRT18P27-201ENST00000427733 1299 ntBASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 NKAPP1-205ENST00000585790 367 ntBASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 MTDHP4-201ENST00000600287 670 ntBASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 Z82202.1-201ENST00000623446 1880 ntBASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 LINC01521-201ENST00000504184 1943 ntBASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 AC005034.1-201ENST00000426657 489 ntBASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.48■□□□□ 0.23
COL6A6A6NMZ7 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms