Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 MCCD1P2-201ENST00000423228 335 ntBASIC19.45■□□□□ 0.7
CHD9Q3L8U1 MTDHP4-201ENST00000600287 670 ntBASIC19.45■□□□□ 0.7
CHD9Q3L8U1 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.44■□□□□ 0.7
CHD9Q3L8U1 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.44■□□□□ 0.7
CHD9Q3L8U1 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.44■□□□□ 0.7
CHD9Q3L8U1 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHD9Q3L8U1 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHD9Q3L8U1 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHD9Q3L8U1 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.44■□□□□ 0.7
CHD9Q3L8U1 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHD9Q3L8U1 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHD9Q3L8U1 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHD9Q3L8U1 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC19.44■□□□□ 0.7
CHD9Q3L8U1 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC19.44■□□□□ 0.7
CHD9Q3L8U1 KRT18P41-201ENST00000518924 1277 ntBASIC19.44■□□□□ 0.7
CHD9Q3L8U1 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.44■□□□□ 0.7
CHD9Q3L8U1 AL139288.1-201ENST00000623748 933 ntBASIC19.44■□□□□ 0.7
CHD9Q3L8U1 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHD9Q3L8U1 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHD9Q3L8U1 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 HLA-J-202ENST00000469281 1241 ntBASIC19.43■□□□□ 0.7
CHD9Q3L8U1 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 AL163051.1-201ENST00000569214 1512 ntBASIC19.43■□□□□ 0.7
CHD9Q3L8U1 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHD9Q3L8U1 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 AC027612.4-201ENST00000605371 583 ntBASIC19.42■□□□□ 0.7
CHD9Q3L8U1 AC112777.1-201ENST00000540175 1423 ntBASIC19.42■□□□□ 0.7
CHD9Q3L8U1 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 WBP2-203ENST00000433525 928 ntTSL 2 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms