Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDAC4P56524 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
HDAC4P56524 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.24■□□□□ 0.67
HDAC4P56524 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.24■□□□□ 0.67
HDAC4P56524 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.24■□□□□ 0.67
HDAC4P56524 LINC01023-201ENST00000606054 436 ntBASIC19.24■□□□□ 0.67
HDAC4P56524 AC024243.1-201ENST00000609234 778 ntBASIC19.24■□□□□ 0.67
HDAC4P56524 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDAC4P56524 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.24■□□□□ 0.67
HDAC4P56524 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDAC4P56524 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HDAC4P56524 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.24■□□□□ 0.67
HDAC4P56524 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.24■□□□□ 0.67
HDAC4P56524 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDAC4P56524 BICD1-207ENST00000551848 1962 ntBASIC19.24■□□□□ 0.67
HDAC4P56524 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDAC4P56524 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HDAC4P56524 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HDAC4P56524 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HDAC4P56524 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.23■□□□□ 0.67
HDAC4P56524 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.23■□□□□ 0.67
HDAC4P56524 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HDAC4P56524 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.23■□□□□ 0.67
HDAC4P56524 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HDAC4P56524 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
HDAC4P56524 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.23■□□□□ 0.67
HDAC4P56524 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HDAC4P56524 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
HDAC4P56524 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HDAC4P56524 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.23■□□□□ 0.67
HDAC4P56524 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.23■□□□□ 0.67
HDAC4P56524 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.23■□□□□ 0.67
HDAC4P56524 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
HDAC4P56524 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
HDAC4P56524 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.23■□□□□ 0.67
HDAC4P56524 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.23■□□□□ 0.67
HDAC4P56524 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HDAC4P56524 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HDAC4P56524 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HDAC4P56524 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HDAC4P56524 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
HDAC4P56524 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.23■□□□□ 0.67
HDAC4P56524 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
HDAC4P56524 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HDAC4P56524 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
HDAC4P56524 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
HDAC4P56524 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.22■□□□□ 0.67
HDAC4P56524 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
HDAC4P56524 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
HDAC4P56524 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.22■□□□□ 0.67
HDAC4P56524 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.22■□□□□ 0.67
HDAC4P56524 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.22■□□□□ 0.67
HDAC4P56524 SDHAP2-201ENST00000455183 2001 ntBASIC19.22■□□□□ 0.67
HDAC4P56524 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.22■□□□□ 0.67
HDAC4P56524 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.22■□□□□ 0.67
HDAC4P56524 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.22■□□□□ 0.67
HDAC4P56524 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.22■□□□□ 0.67
HDAC4P56524 AC005521.1-201ENST00000393351 872 ntBASIC19.22■□□□□ 0.67
HDAC4P56524 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.22■□□□□ 0.67
HDAC4P56524 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.22■□□□□ 0.67
HDAC4P56524 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.22■□□□□ 0.67
HDAC4P56524 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.22■□□□□ 0.67
HDAC4P56524 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
HDAC4P56524 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
HDAC4P56524 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.22■□□□□ 0.67
HDAC4P56524 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
HDAC4P56524 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.22■□□□□ 0.67
HDAC4P56524 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.22■□□□□ 0.67
HDAC4P56524 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
HDAC4P56524 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.22■□□□□ 0.67
HDAC4P56524 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDAC4P56524 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.21■□□□□ 0.67
HDAC4P56524 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDAC4P56524 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDAC4P56524 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDAC4P56524 AC135050.7-201ENST00000624508 2218 ntBASIC19.21■□□□□ 0.67
HDAC4P56524 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.21■□□□□ 0.67
HDAC4P56524 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDAC4P56524 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDAC4P56524 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HDAC4P56524 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms