Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PUS1-205ENST00000535067 838 ntTSL 3 BASIC22.33■■□□□ 1.17
BRCA1P38398 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC22.33■■□□□ 1.17
BRCA1P38398 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC22.33■■□□□ 1.17
BRCA1P38398 AC092865.6-201ENST00000642101 219 ntBASIC22.33■■□□□ 1.17
BRCA1P38398 ELL2P1-201ENST00000413990 1906 ntBASIC22.33■■□□□ 1.17
BRCA1P38398 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC22.33■■□□□ 1.17
BRCA1P38398 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
BRCA1P38398 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC22.33■■□□□ 1.16
BRCA1P38398 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC22.33■■□□□ 1.16
BRCA1P38398 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC22.33■■□□□ 1.16
BRCA1P38398 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC22.33■■□□□ 1.16
BRCA1P38398 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
BRCA1P38398 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC22.33■■□□□ 1.16
BRCA1P38398 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
BRCA1P38398 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
BRCA1P38398 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
BRCA1P38398 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC22.32■■□□□ 1.16
BRCA1P38398 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
BRCA1P38398 CIPC-205ENST00000555437 566 ntTSL 3 BASIC22.32■■□□□ 1.16
BRCA1P38398 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC22.32■■□□□ 1.16
BRCA1P38398 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC22.32■■□□□ 1.16
BRCA1P38398 MIR4469-201ENST00000583919 79 ntBASIC22.32■■□□□ 1.16
BRCA1P38398 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
BRCA1P38398 PALM-208ENST00000592155 2272 ntTSL 4 BASIC22.32■■□□□ 1.16
BRCA1P38398 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC22.32■■□□□ 1.16
BRCA1P38398 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
BRCA1P38398 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
BRCA1P38398 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
BRCA1P38398 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
BRCA1P38398 AC007375.3-201ENST00000600936 2314 ntBASIC22.31■■□□□ 1.16
BRCA1P38398 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
BRCA1P38398 AC097374.2-201ENST00000618617 1306 ntBASIC22.31■■□□□ 1.16
BRCA1P38398 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC22.31■■□□□ 1.16
BRCA1P38398 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
BRCA1P38398 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
BRCA1P38398 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
BRCA1P38398 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC22.31■■□□□ 1.16
BRCA1P38398 MIR770-201ENST00000390219 98 ntBASIC22.31■■□□□ 1.16
BRCA1P38398 SYS1-203ENST00000414310 795 ntTSL 3 BASIC22.31■■□□□ 1.16
BRCA1P38398 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
BRCA1P38398 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC22.31■■□□□ 1.16
BRCA1P38398 AC136632.2-201ENST00000512891 861 ntBASIC22.31■■□□□ 1.16
BRCA1P38398 AP000344.2-201ENST00000512987 629 ntBASIC22.31■■□□□ 1.16
BRCA1P38398 AL096865.1-201ENST00000606796 927 ntBASIC22.31■■□□□ 1.16
BRCA1P38398 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC22.31■■□□□ 1.16
BRCA1P38398 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC22.31■■□□□ 1.16
BRCA1P38398 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC22.31■■□□□ 1.16
BRCA1P38398 PWWP2AP1-201ENST00000429776 2273 ntBASIC22.31■■□□□ 1.16
BRCA1P38398 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
BRCA1P38398 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
BRCA1P38398 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC22.3■■□□□ 1.16
BRCA1P38398 AC108073.2-201ENST00000464002 357 ntBASIC22.3■■□□□ 1.16
BRCA1P38398 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
BRCA1P38398 AC006557.2-201ENST00000592985 1240 ntBASIC22.3■■□□□ 1.16
BRCA1P38398 AL078644.1-201ENST00000609881 752 ntBASIC22.3■■□□□ 1.16
BRCA1P38398 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
BRCA1P38398 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC22.3■■□□□ 1.16
BRCA1P38398 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
BRCA1P38398 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
BRCA1P38398 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC22.3■■□□□ 1.16
BRCA1P38398 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
BRCA1P38398 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
BRCA1P38398 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
BRCA1P38398 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC22.3■■□□□ 1.16
BRCA1P38398 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC22.3■■□□□ 1.16
BRCA1P38398 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
BRCA1P38398 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
BRCA1P38398 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
BRCA1P38398 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
BRCA1P38398 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC22.3■■□□□ 1.16
BRCA1P38398 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC22.3■■□□□ 1.16
BRCA1P38398 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC22.3■■□□□ 1.16
BRCA1P38398 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC22.3■■□□□ 1.16
BRCA1P38398 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC22.3■■□□□ 1.16
BRCA1P38398 AP002472.1-201ENST00000577490 586 ntBASIC22.3■■□□□ 1.16
BRCA1P38398 C20orf181-201ENST00000623918 480 ntBASIC22.3■■□□□ 1.16
BRCA1P38398 PGM5P2-202ENST00000637225 1043 ntBASIC22.3■■□□□ 1.16
BRCA1P38398 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC22.3■■□□□ 1.16
BRCA1P38398 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
BRCA1P38398 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC22.29■■□□□ 1.16
BRCA1P38398 SIGLEC16-201ENST00000599858 1437 ntBASIC22.29■■□□□ 1.16
BRCA1P38398 ASL-204ENST00000395331 1538 ntTSL 5 BASIC22.29■■□□□ 1.16
BRCA1P38398 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
BRCA1P38398 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
BRCA1P38398 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
BRCA1P38398 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
BRCA1P38398 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC22.29■■□□□ 1.16
BRCA1P38398 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
BRCA1P38398 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC22.29■■□□□ 1.16
BRCA1P38398 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC22.29■■□□□ 1.16
BRCA1P38398 AC092364.2-202ENST00000597012 1073 ntBASIC22.29■■□□□ 1.16
BRCA1P38398 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
BRCA1P38398 GOLGA6L17P-202ENST00000614358 1398 ntBASIC22.29■■□□□ 1.16
BRCA1P38398 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC22.29■■□□□ 1.16
BRCA1P38398 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC22.29■■□□□ 1.16
BRCA1P38398 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
BRCA1P38398 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
BRCA1P38398 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC22.29■■□□□ 1.16
BRCA1P38398 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
BRCA1P38398 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms