Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL2A1P02458 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL2A1P02458 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL2A1P02458 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL2A1P02458 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL2A1P02458 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL2A1P02458 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL2A1P02458 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL2A1P02458 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
COL2A1P02458 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC21.44■■□□□ 1.02
COL2A1P02458 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC21.44■■□□□ 1.02
COL2A1P02458 THAP5-204ENST00000438865 868 ntTSL 2 BASIC21.44■■□□□ 1.02
COL2A1P02458 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL2A1P02458 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL2A1P02458 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
COL2A1P02458 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC21.44■■□□□ 1.02
COL2A1P02458 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
COL2A1P02458 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC21.44■■□□□ 1.02
COL2A1P02458 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL2A1P02458 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL2A1P02458 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.44■■□□□ 1.02
COL2A1P02458 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
COL2A1P02458 INTS4P1-201ENST00000438455 1935 ntBASIC21.44■■□□□ 1.02
COL2A1P02458 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL2A1P02458 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL2A1P02458 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL2A1P02458 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL2A1P02458 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
COL2A1P02458 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC21.43■■□□□ 1.02
COL2A1P02458 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL2A1P02458 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.43■■□□□ 1.02
COL2A1P02458 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL2A1P02458 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL2A1P02458 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC21.43■■□□□ 1.02
COL2A1P02458 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC21.43■■□□□ 1.02
COL2A1P02458 AC064862.7-201ENST00000604520 867 ntBASIC21.43■■□□□ 1.02
COL2A1P02458 AL355877.3-201ENST00000622820 899 ntBASIC21.43■■□□□ 1.02
COL2A1P02458 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.43■■□□□ 1.02
COL2A1P02458 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.43■■□□□ 1.02
COL2A1P02458 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
COL2A1P02458 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL2A1P02458 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL2A1P02458 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
COL2A1P02458 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC21.42■■□□□ 1.02
COL2A1P02458 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL2A1P02458 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL2A1P02458 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC21.42■■□□□ 1.02
COL2A1P02458 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC21.42■■□□□ 1.02
COL2A1P02458 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.42■■□□□ 1.02
COL2A1P02458 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL2A1P02458 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL2A1P02458 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL2A1P02458 RCN1P2-201ENST00000398357 915 ntBASIC21.42■■□□□ 1.02
COL2A1P02458 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC21.42■■□□□ 1.02
COL2A1P02458 FGFR3P6-201ENST00000457012 610 ntBASIC21.42■■□□□ 1.02
COL2A1P02458 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC21.42■■□□□ 1.02
COL2A1P02458 AP001005.1-201ENST00000571755 1248 ntBASIC21.42■■□□□ 1.02
COL2A1P02458 BX640515.1-201ENST00000617215 977 ntBASIC21.42■■□□□ 1.02
COL2A1P02458 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.42■■□□□ 1.02
COL2A1P02458 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL2A1P02458 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.42■■□□□ 1.02
COL2A1P02458 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
COL2A1P02458 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL2A1P02458 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL2A1P02458 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL2A1P02458 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL2A1P02458 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL2A1P02458 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
COL2A1P02458 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL2A1P02458 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.41■■□□□ 1.02
COL2A1P02458 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL2A1P02458 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
COL2A1P02458 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL2A1P02458 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC21.41■■□□□ 1.02
COL2A1P02458 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC21.41■■□□□ 1.02
COL2A1P02458 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.41■■□□□ 1.02
COL2A1P02458 IRF8-202ENST00000562492 946 ntTSL 3 BASIC21.41■■□□□ 1.02
COL2A1P02458 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC21.41■■□□□ 1.02
COL2A1P02458 MIR7706-201ENST00000613747 67 ntBASIC21.41■■□□□ 1.02
COL2A1P02458 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
COL2A1P02458 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC21.41■■□□□ 1.02
COL2A1P02458 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
COL2A1P02458 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.41■■□□□ 1.02
COL2A1P02458 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL2A1P02458 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL2A1P02458 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL2A1P02458 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
COL2A1P02458 LINC00602-201ENST00000629776 2065 ntBASIC21.41■■□□□ 1.02
COL2A1P02458 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL2A1P02458 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL2A1P02458 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
COL2A1P02458 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL2A1P02458 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL2A1P02458 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC21.4■■□□□ 1.02
COL2A1P02458 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL2A1P02458 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC21.4■■□□□ 1.02
COL2A1P02458 AL671883.3-201ENST00000603274 991 ntBASIC21.4■■□□□ 1.02
COL2A1P02458 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC21.4■■□□□ 1.02
COL2A1P02458 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC21.4■■□□□ 1.02
COL2A1P02458 AP001269.4-201ENST00000609611 512 ntBASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms