Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SHOX2O60902 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.46■□□□□ 0.55
SHOX2O60902 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.46■□□□□ 0.54
SHOX2O60902 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.45■□□□□ 0.54
SHOX2O60902 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.45■□□□□ 0.54
SHOX2O60902 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SHOX2O60902 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.45■□□□□ 0.54
SHOX2O60902 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.45■□□□□ 0.54
SHOX2O60902 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.45■□□□□ 0.54
SHOX2O60902 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.45■□□□□ 0.54
SHOX2O60902 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SHOX2O60902 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHOX2O60902 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
SHOX2O60902 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
SHOX2O60902 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHOX2O60902 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
SHOX2O60902 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SHOX2O60902 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHOX2O60902 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHOX2O60902 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SHOX2O60902 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHOX2O60902 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHOX2O60902 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.44■□□□□ 0.54
SHOX2O60902 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.44■□□□□ 0.54
SHOX2O60902 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHOX2O60902 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.44■□□□□ 0.54
SHOX2O60902 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SHOX2O60902 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHOX2O60902 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHOX2O60902 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SHOX2O60902 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHOX2O60902 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SHOX2O60902 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHOX2O60902 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHOX2O60902 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHOX2O60902 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHOX2O60902 AP006587.1-201ENST00000534129 1502 ntBASIC18.44■□□□□ 0.54
SHOX2O60902 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHOX2O60902 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHOX2O60902 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.43■□□□□ 0.54
SHOX2O60902 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHOX2O60902 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHOX2O60902 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.43■□□□□ 0.54
SHOX2O60902 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHOX2O60902 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHOX2O60902 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.43■□□□□ 0.54
SHOX2O60902 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHOX2O60902 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHOX2O60902 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.43■□□□□ 0.54
SHOX2O60902 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHOX2O60902 LINC02199-201ENST00000506655 2702 ntBASIC18.43■□□□□ 0.54
SHOX2O60902 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHOX2O60902 KRT18P16-201ENST00000510337 1294 ntBASIC18.43■□□□□ 0.54
SHOX2O60902 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.43■□□□□ 0.54
SHOX2O60902 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
SHOX2O60902 AC013268.1-206ENST00000638368 961 ntBASIC18.43■□□□□ 0.54
SHOX2O60902 AC112229.1-201ENST00000639295 961 ntBASIC18.43■□□□□ 0.54
SHOX2O60902 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHOX2O60902 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHOX2O60902 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
SHOX2O60902 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHOX2O60902 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.43■□□□□ 0.54
SHOX2O60902 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHOX2O60902 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHOX2O60902 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.43■□□□□ 0.54
SHOX2O60902 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHOX2O60902 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
SHOX2O60902 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHOX2O60902 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHOX2O60902 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.42■□□□□ 0.54
SHOX2O60902 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.42■□□□□ 0.54
SHOX2O60902 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.42■□□□□ 0.54
SHOX2O60902 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHOX2O60902 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHOX2O60902 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.42■□□□□ 0.54
SHOX2O60902 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHOX2O60902 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.42■□□□□ 0.54
SHOX2O60902 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHOX2O60902 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHOX2O60902 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.42■□□□□ 0.54
SHOX2O60902 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHOX2O60902 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.42■□□□□ 0.54
SHOX2O60902 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHOX2O60902 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms