Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.83■□□□□ 0.44
GFRA3O60609 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.83■□□□□ 0.44
GFRA3O60609 AC109322.1-201ENST00000524499 1264 ntBASIC17.83■□□□□ 0.44
GFRA3O60609 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
GFRA3O60609 MIR4751-201ENST00000578027 74 ntBASIC17.83■□□□□ 0.44
GFRA3O60609 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.83■□□□□ 0.44
GFRA3O60609 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.83■□□□□ 0.44
GFRA3O60609 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.83■□□□□ 0.44
GFRA3O60609 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
GFRA3O60609 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
GFRA3O60609 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.83■□□□□ 0.44
GFRA3O60609 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.83■□□□□ 0.44
GFRA3O60609 ZNF815P-204ENST00000434898 1737 ntBASIC17.83■□□□□ 0.44
GFRA3O60609 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
GFRA3O60609 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
GFRA3O60609 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
GFRA3O60609 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
GFRA3O60609 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
GFRA3O60609 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
GFRA3O60609 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
GFRA3O60609 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.82■□□□□ 0.44
GFRA3O60609 AC073621.1-201ENST00000392730 636 ntBASIC17.82■□□□□ 0.44
GFRA3O60609 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.82■□□□□ 0.44
GFRA3O60609 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.82■□□□□ 0.44
GFRA3O60609 TFAMP1-201ENST00000412727 736 ntBASIC17.82■□□□□ 0.44
GFRA3O60609 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.82■□□□□ 0.44
GFRA3O60609 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.82■□□□□ 0.44
GFRA3O60609 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.82■□□□□ 0.44
GFRA3O60609 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.82■□□□□ 0.44
GFRA3O60609 RN7SL204P-201ENST00000582831 262 ntBASIC17.82■□□□□ 0.44
GFRA3O60609 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
GFRA3O60609 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.82■□□□□ 0.44
GFRA3O60609 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
GFRA3O60609 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
GFRA3O60609 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
GFRA3O60609 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
GFRA3O60609 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
GFRA3O60609 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
GFRA3O60609 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
GFRA3O60609 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
GFRA3O60609 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
GFRA3O60609 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
GFRA3O60609 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.81■□□□□ 0.44
GFRA3O60609 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
GFRA3O60609 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
GFRA3O60609 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
GFRA3O60609 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
GFRA3O60609 TSPY16P-201ENST00000449843 468 ntBASIC17.81■□□□□ 0.44
GFRA3O60609 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.81■□□□□ 0.44
GFRA3O60609 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.81■□□□□ 0.44
GFRA3O60609 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
GFRA3O60609 AC068472.1-201ENST00000474589 881 ntBASIC17.81■□□□□ 0.44
GFRA3O60609 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.81■□□□□ 0.44
GFRA3O60609 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.81■□□□□ 0.44
GFRA3O60609 PDPK2P-202ENST00000562415 1191 ntBASIC17.81■□□□□ 0.44
GFRA3O60609 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.81■□□□□ 0.44
GFRA3O60609 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
GFRA3O60609 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
GFRA3O60609 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
GFRA3O60609 LINC00628-201ENST00000628516 1289 ntBASIC17.81■□□□□ 0.44
GFRA3O60609 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.81■□□□□ 0.44
GFRA3O60609 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
GFRA3O60609 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
GFRA3O60609 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
GFRA3O60609 AC009237.14-201ENST00000609975 1594 ntBASIC17.81■□□□□ 0.44
GFRA3O60609 WWC2-AS2-201ENST00000578387 2183 ntBASIC17.81■□□□□ 0.44
GFRA3O60609 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
GFRA3O60609 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
GFRA3O60609 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.8■□□□□ 0.44
GFRA3O60609 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC17.8■□□□□ 0.44
GFRA3O60609 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
GFRA3O60609 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.8■□□□□ 0.44
GFRA3O60609 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 AP002414.1-201ENST00000391405 1147 ntBASIC17.8■□□□□ 0.44
GFRA3O60609 VN2R19P-201ENST00000442399 1052 ntBASIC17.8■□□□□ 0.44
GFRA3O60609 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.8■□□□□ 0.44
GFRA3O60609 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
GFRA3O60609 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.8■□□□□ 0.44
GFRA3O60609 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.8■□□□□ 0.44
GFRA3O60609 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
GFRA3O60609 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 AL513210.1-201ENST00000629608 234 ntBASIC17.8■□□□□ 0.44
GFRA3O60609 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.8■□□□□ 0.44
GFRA3O60609 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.8■□□□□ 0.44
GFRA3O60609 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
GFRA3O60609 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.8■□□□□ 0.44
GFRA3O60609 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms