Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.15■□□□□ 0.5
SNX3O60493 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
SNX3O60493 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.15■□□□□ 0.5
SNX3O60493 AC005837.3-201ENST00000612163 286 ntBASIC18.15■□□□□ 0.5
SNX3O60493 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.15■□□□□ 0.5
SNX3O60493 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.15■□□□□ 0.5
SNX3O60493 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.15■□□□□ 0.5
SNX3O60493 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.15■□□□□ 0.5
SNX3O60493 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SNX3O60493 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
SNX3O60493 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SNX3O60493 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SNX3O60493 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.14■□□□□ 0.5
SNX3O60493 AC008894.3-201ENST00000624324 3103 ntBASIC18.14■□□□□ 0.5
SNX3O60493 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
SNX3O60493 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SNX3O60493 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SNX3O60493 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SNX3O60493 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SNX3O60493 KRT8P41-201ENST00000533985 1514 ntBASIC18.14■□□□□ 0.49
SNX3O60493 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.14■□□□□ 0.49
SNX3O60493 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SNX3O60493 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.14■□□□□ 0.49
SNX3O60493 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SNX3O60493 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.14■□□□□ 0.49
SNX3O60493 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.14■□□□□ 0.49
SNX3O60493 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.14■□□□□ 0.49
SNX3O60493 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.14■□□□□ 0.49
SNX3O60493 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SNX3O60493 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SNX3O60493 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.14■□□□□ 0.49
SNX3O60493 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
SNX3O60493 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SNX3O60493 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SNX3O60493 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SNX3O60493 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SNX3O60493 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SNX3O60493 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SNX3O60493 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.13■□□□□ 0.49
SNX3O60493 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
SNX3O60493 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.13■□□□□ 0.49
SNX3O60493 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
SNX3O60493 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SNX3O60493 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.13■□□□□ 0.49
SNX3O60493 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SNX3O60493 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.13■□□□□ 0.49
SNX3O60493 RALB-208ENST00000631312 311 ntTSL 5 BASIC18.13■□□□□ 0.49
SNX3O60493 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.13■□□□□ 0.49
SNX3O60493 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
SNX3O60493 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.13■□□□□ 0.49
SNX3O60493 KRT8P3-201ENST00000519669 1449 ntBASIC18.13■□□□□ 0.49
SNX3O60493 KRT18P55-202ENST00000578578 1546 ntBASIC18.13■□□□□ 0.49
SNX3O60493 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.13■□□□□ 0.49
SNX3O60493 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
SNX3O60493 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SNX3O60493 PCDHB19P-201ENST00000570871 2371 ntBASIC18.12■□□□□ 0.49
SNX3O60493 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.12■□□□□ 0.49
SNX3O60493 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SNX3O60493 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SNX3O60493 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SNX3O60493 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SNX3O60493 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SNX3O60493 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SNX3O60493 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.12■□□□□ 0.49
SNX3O60493 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SNX3O60493 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.12■□□□□ 0.49
SNX3O60493 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SNX3O60493 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SNX3O60493 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SNX3O60493 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms