Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 PPIH-202ENST00000372549 327 ntTSL 3 BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 AP002383.4-201ENST00000442518 975 ntBASIC15□□□□□ -0.01
TRAV40A0A0B4J280 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 AL691432.3-201ENST00000621860 400 ntBASIC15□□□□□ -0.01
TRAV40A0A0B4J280 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 USP39-202ENST00000409025 1946 ntTSL 5 BASIC15□□□□□ -0.01
TRAV40A0A0B4J280 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 AP000593.1-201ENST00000393668 712 ntBASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 TEN1-204ENST00000588202 862 ntTSL 3 BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 AC005332.3-201ENST00000589904 676 ntBASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 IL11-204ENST00000590625 1028 ntTSL 2 BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV40A0A0B4J280 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 LINC00265-3P-201ENST00000447588 903 ntBASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 REEP1-209ENST00000541910 969 ntTSL 2 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 MIR3180-1-201ENST00000580374 94 ntBASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms