Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx28Q9CWT6 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
Ddx28Q9CWT6 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx28Q9CWT6 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx28Q9CWT6 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC21.01■□□□□ 0.95
Ddx28Q9CWT6 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx28Q9CWT6 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21■□□□□ 0.95
Ddx28Q9CWT6 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21■□□□□ 0.95
Ddx28Q9CWT6 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC21■□□□□ 0.95
Ddx28Q9CWT6 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Ddx28Q9CWT6 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ddx28Q9CWT6 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ddx28Q9CWT6 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ddx28Q9CWT6 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC20.99■□□□□ 0.95
Ddx28Q9CWT6 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ddx28Q9CWT6 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC20.99■□□□□ 0.95
Ddx28Q9CWT6 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.98■□□□□ 0.95
Ddx28Q9CWT6 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Ddx28Q9CWT6 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Ddx28Q9CWT6 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Ddx28Q9CWT6 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Ddx28Q9CWT6 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ddx28Q9CWT6 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ddx28Q9CWT6 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ddx28Q9CWT6 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ddx28Q9CWT6 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ddx28Q9CWT6 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ddx28Q9CWT6 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.95
Ddx28Q9CWT6 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx28Q9CWT6 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC20.95■□□□□ 0.94
Ddx28Q9CWT6 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx28Q9CWT6 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC20.95■□□□□ 0.94
Ddx28Q9CWT6 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx28Q9CWT6 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx28Q9CWT6 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx28Q9CWT6 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx28Q9CWT6 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx28Q9CWT6 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Ddx28Q9CWT6 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Ddx28Q9CWT6 Gm8503-201ENSMUST00000118131 455 ntBASIC20.94■□□□□ 0.94
Ddx28Q9CWT6 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx28Q9CWT6 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx28Q9CWT6 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Ddx28Q9CWT6 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ddx28Q9CWT6 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ddx28Q9CWT6 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ddx28Q9CWT6 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC20.93■□□□□ 0.94
Ddx28Q9CWT6 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ddx28Q9CWT6 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC20.93■□□□□ 0.94
Ddx28Q9CWT6 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Ddx28Q9CWT6 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ddx28Q9CWT6 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC20.92■□□□□ 0.94
Ddx28Q9CWT6 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ddx28Q9CWT6 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx28Q9CWT6 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx28Q9CWT6 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.91■□□□□ 0.94
Ddx28Q9CWT6 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx28Q9CWT6 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx28Q9CWT6 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx28Q9CWT6 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC20.9■□□□□ 0.94
Ddx28Q9CWT6 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx28Q9CWT6 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
Ddx28Q9CWT6 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx28Q9CWT6 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Ddx28Q9CWT6 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.94
Ddx28Q9CWT6 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ddx28Q9CWT6 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC20.89■□□□□ 0.93
Ddx28Q9CWT6 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx28Q9CWT6 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Ddx28Q9CWT6 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Ddx28Q9CWT6 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx28Q9CWT6 Gm14121-201ENSMUST00000121441 1380 ntBASIC20.86■□□□□ 0.93
Ddx28Q9CWT6 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx28Q9CWT6 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx28Q9CWT6 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx28Q9CWT6 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Ddx28Q9CWT6 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Ddx28Q9CWT6 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx28Q9CWT6 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx28Q9CWT6 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx28Q9CWT6 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx28Q9CWT6 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx28Q9CWT6 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx28Q9CWT6 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx28Q9CWT6 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx28Q9CWT6 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx28Q9CWT6 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx28Q9CWT6 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx28Q9CWT6 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ddx28Q9CWT6 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ddx28Q9CWT6 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ddx28Q9CWT6 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ddx28Q9CWT6 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ddx28Q9CWT6 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddx28Q9CWT6 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddx28Q9CWT6 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ddx28Q9CWT6 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.82■□□□□ 0.92
Ddx28Q9CWT6 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.82■□□□□ 0.92
Ddx28Q9CWT6 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Ddx28Q9CWT6 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 67.2 ms