Protein–RNA interactions for Protein: Q8VIG6

Traip, E3 ubiquitin-protein ligase TRAIP, mousemouse

Predictions only

Length 470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TraipQ8VIG6 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC24.5■■□□□ 1.51
TraipQ8VIG6 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
TraipQ8VIG6 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
TraipQ8VIG6 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC24.5■■□□□ 1.51
TraipQ8VIG6 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC24.5■■□□□ 1.51
TraipQ8VIG6 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TraipQ8VIG6 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
TraipQ8VIG6 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
TraipQ8VIG6 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
TraipQ8VIG6 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
TraipQ8VIG6 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
TraipQ8VIG6 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC24.48■■□□□ 1.51
TraipQ8VIG6 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC24.47■■□□□ 1.51
TraipQ8VIG6 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC24.47■■□□□ 1.51
TraipQ8VIG6 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC24.47■■□□□ 1.51
TraipQ8VIG6 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
TraipQ8VIG6 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
TraipQ8VIG6 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
TraipQ8VIG6 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
TraipQ8VIG6 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC24.45■■□□□ 1.5
TraipQ8VIG6 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC24.45■■□□□ 1.5
TraipQ8VIG6 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC24.44■■□□□ 1.5
TraipQ8VIG6 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC24.44■■□□□ 1.5
TraipQ8VIG6 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
TraipQ8VIG6 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
TraipQ8VIG6 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
TraipQ8VIG6 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
TraipQ8VIG6 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
TraipQ8VIG6 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
TraipQ8VIG6 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
TraipQ8VIG6 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TraipQ8VIG6 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
TraipQ8VIG6 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TraipQ8VIG6 Gm10420-201ENSMUST00000121713 882 ntBASIC24.41■■□□□ 1.5
TraipQ8VIG6 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
TraipQ8VIG6 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC24.39■■□□□ 1.49
TraipQ8VIG6 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
TraipQ8VIG6 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
TraipQ8VIG6 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
TraipQ8VIG6 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
TraipQ8VIG6 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
TraipQ8VIG6 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
TraipQ8VIG6 Gm5067-201ENSMUST00000170449 1009 ntBASIC24.37■■□□□ 1.49
TraipQ8VIG6 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC24.37■■□□□ 1.49
TraipQ8VIG6 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
TraipQ8VIG6 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
TraipQ8VIG6 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
TraipQ8VIG6 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC24.35■■□□□ 1.49
TraipQ8VIG6 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
TraipQ8VIG6 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
TraipQ8VIG6 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
TraipQ8VIG6 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
TraipQ8VIG6 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
TraipQ8VIG6 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC24.34■■□□□ 1.49
TraipQ8VIG6 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
TraipQ8VIG6 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
TraipQ8VIG6 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
TraipQ8VIG6 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
TraipQ8VIG6 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
TraipQ8VIG6 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
TraipQ8VIG6 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC24.33■■□□□ 1.49
TraipQ8VIG6 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
TraipQ8VIG6 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
TraipQ8VIG6 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC24.31■■□□□ 1.48
TraipQ8VIG6 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
TraipQ8VIG6 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
TraipQ8VIG6 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC24.31■■□□□ 1.48
TraipQ8VIG6 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
TraipQ8VIG6 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
TraipQ8VIG6 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
TraipQ8VIG6 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TraipQ8VIG6 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC24.3■■□□□ 1.48
TraipQ8VIG6 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TraipQ8VIG6 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TraipQ8VIG6 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TraipQ8VIG6 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TraipQ8VIG6 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
TraipQ8VIG6 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
TraipQ8VIG6 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC24.29■■□□□ 1.48
TraipQ8VIG6 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC24.29■■□□□ 1.48
TraipQ8VIG6 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC24.28■■□□□ 1.48
TraipQ8VIG6 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
TraipQ8VIG6 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
TraipQ8VIG6 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
TraipQ8VIG6 AC117769.4-201ENSMUST00000225679 685 ntBASIC24.27■■□□□ 1.48
TraipQ8VIG6 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
TraipQ8VIG6 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
TraipQ8VIG6 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
TraipQ8VIG6 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
TraipQ8VIG6 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TraipQ8VIG6 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TraipQ8VIG6 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TraipQ8VIG6 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TraipQ8VIG6 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
TraipQ8VIG6 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
TraipQ8VIG6 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC24.23■■□□□ 1.47
TraipQ8VIG6 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
TraipQ8VIG6 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
TraipQ8VIG6 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
TraipQ8VIG6 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Retrieved 100 of 76,532 protein–RNA pairs in 12 ms