Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Chmp7Q8R1T1 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC29.58■■■□□ 2.33
Chmp7Q8R1T1 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
Chmp7Q8R1T1 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
Chmp7Q8R1T1 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
Chmp7Q8R1T1 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
Chmp7Q8R1T1 Gm44428-201ENSMUST00000204474 874 ntBASIC29.57■■■□□ 2.32
Chmp7Q8R1T1 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
Chmp7Q8R1T1 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
Chmp7Q8R1T1 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
Chmp7Q8R1T1 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC29.56■■■□□ 2.32
Chmp7Q8R1T1 Gm4419-202ENSMUST00000226239 1431 ntBASIC29.55■■■□□ 2.32
Chmp7Q8R1T1 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
Chmp7Q8R1T1 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Chmp7Q8R1T1 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Chmp7Q8R1T1 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC29.54■■■□□ 2.32
Chmp7Q8R1T1 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC29.54■■■□□ 2.32
Chmp7Q8R1T1 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC29.53■■■□□ 2.32
Chmp7Q8R1T1 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Chmp7Q8R1T1 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC29.53■■■□□ 2.32
Chmp7Q8R1T1 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC29.53■■■□□ 2.32
Chmp7Q8R1T1 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Chmp7Q8R1T1 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC29.52■■■□□ 2.32
Chmp7Q8R1T1 Gm5921-201ENSMUST00000075898 882 ntBASIC29.52■■■□□ 2.32
Chmp7Q8R1T1 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
Chmp7Q8R1T1 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC29.52■■■□□ 2.32
Chmp7Q8R1T1 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC29.51■■■□□ 2.32
Chmp7Q8R1T1 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC29.51■■■□□ 2.31
Chmp7Q8R1T1 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Chmp7Q8R1T1 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
Chmp7Q8R1T1 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC29.48■■■□□ 2.31
Chmp7Q8R1T1 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
Chmp7Q8R1T1 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
Chmp7Q8R1T1 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC29.46■■■□□ 2.31
Chmp7Q8R1T1 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
Chmp7Q8R1T1 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC29.45■■■□□ 2.3
Chmp7Q8R1T1 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
Chmp7Q8R1T1 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
Chmp7Q8R1T1 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC29.43■■■□□ 2.3
Chmp7Q8R1T1 Gm5812-201ENSMUST00000061073 957 ntBASIC29.42■■■□□ 2.3
Chmp7Q8R1T1 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC29.42■■■□□ 2.3
Chmp7Q8R1T1 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC29.41■■■□□ 2.3
Chmp7Q8R1T1 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC29.41■■■□□ 2.3
Chmp7Q8R1T1 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC29.41■■■□□ 2.3
Chmp7Q8R1T1 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
Chmp7Q8R1T1 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Chmp7Q8R1T1 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
Chmp7Q8R1T1 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
Chmp7Q8R1T1 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC29.38■■■□□ 2.29
Chmp7Q8R1T1 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
Chmp7Q8R1T1 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC29.37■■■□□ 2.29
Chmp7Q8R1T1 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Chmp7Q8R1T1 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Chmp7Q8R1T1 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Chmp7Q8R1T1 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC29.36■■■□□ 2.29
Chmp7Q8R1T1 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
Chmp7Q8R1T1 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC29.35■■■□□ 2.29
Chmp7Q8R1T1 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC29.35■■■□□ 2.29
Chmp7Q8R1T1 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC29.35■■■□□ 2.29
Chmp7Q8R1T1 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC29.34■■■□□ 2.29
Chmp7Q8R1T1 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC29.34■■■□□ 2.29
Chmp7Q8R1T1 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Chmp7Q8R1T1 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
Chmp7Q8R1T1 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC29.32■■■□□ 2.28
Chmp7Q8R1T1 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC29.32■■■□□ 2.28
Chmp7Q8R1T1 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC29.31■■■□□ 2.28
Chmp7Q8R1T1 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Chmp7Q8R1T1 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Chmp7Q8R1T1 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC29.28■■■□□ 2.28
Chmp7Q8R1T1 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
Chmp7Q8R1T1 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
Chmp7Q8R1T1 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
Chmp7Q8R1T1 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
Chmp7Q8R1T1 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC29.28■■■□□ 2.28
Chmp7Q8R1T1 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Chmp7Q8R1T1 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
Chmp7Q8R1T1 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
Chmp7Q8R1T1 Fezf2-202ENSMUST00000224023 1917 ntBASIC29.26■■■□□ 2.27
Chmp7Q8R1T1 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.27
Chmp7Q8R1T1 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
Chmp7Q8R1T1 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC29.26■■■□□ 2.27
Chmp7Q8R1T1 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
Chmp7Q8R1T1 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Chmp7Q8R1T1 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
Chmp7Q8R1T1 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC29.25■■■□□ 2.27
Chmp7Q8R1T1 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Chmp7Q8R1T1 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Chmp7Q8R1T1 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Chmp7Q8R1T1 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Chmp7Q8R1T1 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
Chmp7Q8R1T1 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
Chmp7Q8R1T1 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
Chmp7Q8R1T1 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC29.23■■■□□ 2.27
Chmp7Q8R1T1 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC29.23■■■□□ 2.27
Chmp7Q8R1T1 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC29.22■■■□□ 2.27
Chmp7Q8R1T1 AC117769.4-201ENSMUST00000225679 685 ntBASIC29.22■■■□□ 2.27
Chmp7Q8R1T1 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Chmp7Q8R1T1 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Chmp7Q8R1T1 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
Chmp7Q8R1T1 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC29.21■■■□□ 2.27
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms