Protein–RNA interactions for Protein: Q6H1V1

Best3, Bestrophin-3, mousemouse

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Best3Q6H1V1 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC27.79■■■□□ 2.04
Best3Q6H1V1 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Best3Q6H1V1 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
Best3Q6H1V1 Gm4419-202ENSMUST00000226239 1431 ntBASIC27.76■■■□□ 2.04
Best3Q6H1V1 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
Best3Q6H1V1 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
Best3Q6H1V1 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC27.76■■■□□ 2.03
Best3Q6H1V1 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC27.75■■■□□ 2.03
Best3Q6H1V1 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC27.75■■■□□ 2.03
Best3Q6H1V1 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Best3Q6H1V1 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC27.74■■■□□ 2.03
Best3Q6H1V1 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
Best3Q6H1V1 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC27.73■■■□□ 2.03
Best3Q6H1V1 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
Best3Q6H1V1 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC27.73■■■□□ 2.03
Best3Q6H1V1 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC27.72■■■□□ 2.03
Best3Q6H1V1 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
Best3Q6H1V1 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC27.72■■■□□ 2.03
Best3Q6H1V1 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Best3Q6H1V1 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
Best3Q6H1V1 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
Best3Q6H1V1 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Best3Q6H1V1 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
Best3Q6H1V1 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC27.69■■■□□ 2.02
Best3Q6H1V1 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Best3Q6H1V1 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
Best3Q6H1V1 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
Best3Q6H1V1 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Best3Q6H1V1 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC27.67■■■□□ 2.02
Best3Q6H1V1 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
Best3Q6H1V1 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC27.67■■■□□ 2.02
Best3Q6H1V1 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC27.66■■■□□ 2.02
Best3Q6H1V1 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
Best3Q6H1V1 Gm15546-201ENSMUST00000122095 826 ntBASIC27.66■■■□□ 2.02
Best3Q6H1V1 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Best3Q6H1V1 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC27.65■■■□□ 2.02
Best3Q6H1V1 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
Best3Q6H1V1 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC27.65■■■□□ 2.02
Best3Q6H1V1 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC27.65■■■□□ 2.02
Best3Q6H1V1 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC27.65■■■□□ 2.02
Best3Q6H1V1 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
Best3Q6H1V1 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
Best3Q6H1V1 Amer2-203ENSMUST00000225247 2662 ntBASIC27.64■■■□□ 2.02
Best3Q6H1V1 Gm22567-201ENSMUST00000175542 342 ntBASIC27.64■■■□□ 2.02
Best3Q6H1V1 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
Best3Q6H1V1 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
Best3Q6H1V1 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC27.63■■■□□ 2.01
Best3Q6H1V1 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Best3Q6H1V1 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
Best3Q6H1V1 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC27.62■■■□□ 2.01
Best3Q6H1V1 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC27.62■■■□□ 2.01
Best3Q6H1V1 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
Best3Q6H1V1 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
Best3Q6H1V1 Gm43592-201ENSMUST00000196922 1165 ntBASIC27.61■■■□□ 2.01
Best3Q6H1V1 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Best3Q6H1V1 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC27.61■■■□□ 2.01
Best3Q6H1V1 Gm5522-201ENSMUST00000189483 1242 ntBASIC27.6■■■□□ 2.01
Best3Q6H1V1 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Best3Q6H1V1 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC27.6■■■□□ 2.01
Best3Q6H1V1 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC27.59■■■□□ 2.01
Best3Q6H1V1 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Best3Q6H1V1 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Best3Q6H1V1 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
Best3Q6H1V1 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC27.57■■■□□ 2
Best3Q6H1V1 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Best3Q6H1V1 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC27.55■■■□□ 2
Best3Q6H1V1 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC27.54■■■□□ 2
Best3Q6H1V1 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Best3Q6H1V1 Gm13238-201ENSMUST00000117655 780 ntBASIC27.54■■■□□ 2
Best3Q6H1V1 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC27.54■■■□□ 2
Best3Q6H1V1 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC27.53■■■□□ 2
Best3Q6H1V1 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC27.53■■■□□ 2
Best3Q6H1V1 Gm43566-201ENSMUST00000196851 808 ntBASIC27.53■■■□□ 2
Best3Q6H1V1 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC27.53■■■□□ 2
Best3Q6H1V1 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC27.53■■■□□ 2
Best3Q6H1V1 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC27.5■■□□□ 1.99
Best3Q6H1V1 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
Best3Q6H1V1 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC27.48■■□□□ 1.99
Best3Q6H1V1 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC27.48■■□□□ 1.99
Best3Q6H1V1 Nsd1-203ENSMUST00000224156 1149 ntBASIC27.48■■□□□ 1.99
Best3Q6H1V1 AC117769.4-201ENSMUST00000225679 685 ntBASIC27.48■■□□□ 1.99
Best3Q6H1V1 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Best3Q6H1V1 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
Best3Q6H1V1 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC27.47■■□□□ 1.99
Best3Q6H1V1 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC27.47■■□□□ 1.99
Best3Q6H1V1 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC27.47■■□□□ 1.99
Best3Q6H1V1 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC27.47■■□□□ 1.99
Best3Q6H1V1 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Best3Q6H1V1 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC27.46■■□□□ 1.99
Best3Q6H1V1 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC27.46■■□□□ 1.99
Best3Q6H1V1 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC27.45■■□□□ 1.98
Best3Q6H1V1 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
Best3Q6H1V1 Gm45444-201ENSMUST00000211394 898 ntBASIC27.45■■□□□ 1.98
Best3Q6H1V1 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Best3Q6H1V1 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC27.44■■□□□ 1.98
Best3Q6H1V1 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC27.44■■□□□ 1.98
Best3Q6H1V1 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC27.44■■□□□ 1.98
Best3Q6H1V1 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Best3Q6H1V1 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Best3Q6H1V1 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC27.43■■□□□ 1.98
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms