Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC24.35■■□□□ 1.49
Upf3aQ3ULJ3 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC24.35■■□□□ 1.49
Upf3aQ3ULJ3 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
Upf3aQ3ULJ3 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC24.33■■□□□ 1.49
Upf3aQ3ULJ3 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
Upf3aQ3ULJ3 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC24.32■■□□□ 1.48
Upf3aQ3ULJ3 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
Upf3aQ3ULJ3 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Upf3aQ3ULJ3 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC24.31■■□□□ 1.48
Upf3aQ3ULJ3 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC24.31■■□□□ 1.48
Upf3aQ3ULJ3 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Upf3aQ3ULJ3 Gm4419-202ENSMUST00000226239 1431 ntBASIC24.3■■□□□ 1.48
Upf3aQ3ULJ3 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC24.3■■□□□ 1.48
Upf3aQ3ULJ3 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Upf3aQ3ULJ3 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Upf3aQ3ULJ3 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Upf3aQ3ULJ3 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Upf3aQ3ULJ3 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Upf3aQ3ULJ3 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Upf3aQ3ULJ3 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Upf3aQ3ULJ3 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC24.28■■□□□ 1.48
Upf3aQ3ULJ3 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Upf3aQ3ULJ3 Amer2-203ENSMUST00000225247 2662 ntBASIC24.28■■□□□ 1.48
Upf3aQ3ULJ3 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Upf3aQ3ULJ3 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Upf3aQ3ULJ3 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC24.27■■□□□ 1.48
Upf3aQ3ULJ3 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Upf3aQ3ULJ3 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Upf3aQ3ULJ3 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
Upf3aQ3ULJ3 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Upf3aQ3ULJ3 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Upf3aQ3ULJ3 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC24.23■■□□□ 1.47
Upf3aQ3ULJ3 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Upf3aQ3ULJ3 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC24.22■■□□□ 1.47
Upf3aQ3ULJ3 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Upf3aQ3ULJ3 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Upf3aQ3ULJ3 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Upf3aQ3ULJ3 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Upf3aQ3ULJ3 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Upf3aQ3ULJ3 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
Upf3aQ3ULJ3 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Upf3aQ3ULJ3 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Upf3aQ3ULJ3 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC24.2■■□□□ 1.46
Upf3aQ3ULJ3 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
Upf3aQ3ULJ3 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Upf3aQ3ULJ3 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC24.19■■□□□ 1.46
Upf3aQ3ULJ3 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
Upf3aQ3ULJ3 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Upf3aQ3ULJ3 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
Upf3aQ3ULJ3 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
Upf3aQ3ULJ3 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Upf3aQ3ULJ3 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Upf3aQ3ULJ3 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Upf3aQ3ULJ3 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Upf3aQ3ULJ3 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Upf3aQ3ULJ3 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
Upf3aQ3ULJ3 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Upf3aQ3ULJ3 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
Upf3aQ3ULJ3 Gm15546-201ENSMUST00000122095 826 ntBASIC24.14■■□□□ 1.45
Upf3aQ3ULJ3 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC24.14■■□□□ 1.45
Upf3aQ3ULJ3 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
Upf3aQ3ULJ3 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
Upf3aQ3ULJ3 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Upf3aQ3ULJ3 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC24.13■■□□□ 1.45
Upf3aQ3ULJ3 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Upf3aQ3ULJ3 Gm43592-201ENSMUST00000196922 1165 ntBASIC24.12■■□□□ 1.45
Upf3aQ3ULJ3 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC24.12■■□□□ 1.45
Upf3aQ3ULJ3 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Upf3aQ3ULJ3 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Upf3aQ3ULJ3 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Upf3aQ3ULJ3 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
Upf3aQ3ULJ3 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Upf3aQ3ULJ3 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC24.1■■□□□ 1.45
Upf3aQ3ULJ3 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
Upf3aQ3ULJ3 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Upf3aQ3ULJ3 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Upf3aQ3ULJ3 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Upf3aQ3ULJ3 Gm22567-201ENSMUST00000175542 342 ntBASIC24.09■■□□□ 1.45
Upf3aQ3ULJ3 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
Upf3aQ3ULJ3 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC24.09■■□□□ 1.45
Upf3aQ3ULJ3 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
Upf3aQ3ULJ3 Gm5522-201ENSMUST00000189483 1242 ntBASIC24.07■■□□□ 1.44
Upf3aQ3ULJ3 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC24.06■■□□□ 1.44
Upf3aQ3ULJ3 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Upf3aQ3ULJ3 AC117769.4-201ENSMUST00000225679 685 ntBASIC24.06■■□□□ 1.44
Upf3aQ3ULJ3 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Upf3aQ3ULJ3 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC24.06■■□□□ 1.44
Upf3aQ3ULJ3 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC24.04■■□□□ 1.44
Upf3aQ3ULJ3 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC24.04■■□□□ 1.44
Upf3aQ3ULJ3 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
Upf3aQ3ULJ3 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC24.03■■□□□ 1.44
Upf3aQ3ULJ3 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Upf3aQ3ULJ3 Gm13238-201ENSMUST00000117655 780 ntBASIC24.03■■□□□ 1.44
Upf3aQ3ULJ3 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
Upf3aQ3ULJ3 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Upf3aQ3ULJ3 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Upf3aQ3ULJ3 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC24.02■■□□□ 1.44
Upf3aQ3ULJ3 Gm43566-201ENSMUST00000196851 808 ntBASIC24.02■■□□□ 1.44
Upf3aQ3ULJ3 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Upf3aQ3ULJ3 Nsd1-203ENSMUST00000224156 1149 ntBASIC24.01■■□□□ 1.43
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms